RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 MMP15P51511 669 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 WDR25Q64LD2 544 aaPredicted RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 OR10D3Q8NH80 312 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 BEX4Q9NWD9 120 aaPredicted RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 DOCK9Q9BZ29 2069 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 TOPAZ1Q8N9V7 1692 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 ZCCHC14Q8WYQ9 949 aaKnown RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 NTNG2Q96CW9 530 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 DMRTA2Q96SC8 542 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 RECKO95980 971 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 SLC35B1P78383 322 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 BEND2Q8NDZ0 799 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 HAND1O96004 215 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 CD99P14209 185 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 COX6B1P14854 86 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 MOGAT3Q86VF5 341 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 OR8G5Q8NG78 346 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 PRRX2Q99811 253 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 DUSP21Q9H596 190 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 A0A087X0M5 115 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 A0A1B0GX30 115 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 FAM157CP0CG43 387 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 KCNE3Q9Y6H6 103 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 C2CD4DB7Z1M9 353 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 GP2P55259 537 aaKnown RBP10.1□□□□□ -0.79
PTPN4-201ENST00000263708 MRPS11P82912 194 aaKnown RBP10.1□□□□□ -0.79
PTPN4-201ENST00000263708 FAM27D1Q5T7N8 215 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 SNX22Q96L94 193 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 HIST1H4GQ99525 98 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 SPNS1Q9H2V7 528 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 MMP25Q9NPA2 562 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 LGALS3P17931 250 aaKnown RBP10.1□□□□□ -0.79
PTPN4-201ENST00000263708 ZP3P21754 424 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 LBHQ53QV2 105 aaPredicted RBP10.1□□□□□ -0.79
PTPN4-201ENST00000263708 RPS4Y2Q8TD47 263 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 MVB12AQ96EY5 273 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 C20orf27Q9GZN8 174 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 MAS1LP35410 378 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 IER3P46695 156 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 OR5AU1Q8NGC0 362 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 OR2T10Q8NGZ9 312 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 GGTLC2Q14390 218 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 VN1R17PQ8TDU5 208 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 TUBA4BQ9H853 241 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 R4GN57 208 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 PTHLHP12272 177 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 GUSBP11Q6P575 273 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 FMODQ06828 376 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 SPRED3Q2MJR0 410 aa10.1□□□□□ -0.79
PTPN4-201ENST00000263708 EVX1P49640 407 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 SUMO3P55854 103 aaPredicted RBP10.09□□□□□ -0.79
PTPN4-201ENST00000263708 PF4P02776 101 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 ZBTB37Q5TC79 503 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 AFMIDQ63HM1 303 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 CGB2Q6NT52 195 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 FER1L5A0AVI2 2057 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 A0A1B0GU03 582 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 TRIP6Q15654 476 aaKnown RBP10.09□□□□□ -0.79
PTPN4-201ENST00000263708 Q9N2K0 584 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 PDLIM7Q9NR12 457 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 PRRT4C9JH25 899 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 UPK1AO00322 258 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 HARBI1Q96MB7 349 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 CHRNA10Q9GZZ6 450 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 NUBP1P53384 320 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 CLEC2AQ6UVW9 174 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 CYSLTR2Q9NS75 346 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 EML2O95834 649 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 ZNF32P17041 273 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 Q7L0L9 218 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 ADTRPQ96IZ2 230 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 SOSTQ9BQB4 213 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 PIPOXQ9P0Z9 390 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 RBFOX3A6NFN3 312 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 FUCA1P04066 466 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 RAB9AP51151 201 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 SSPNQ14714 243 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 SFRP2Q96HF1 295 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 TMEM204Q9BSN7 226 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 C11orf68Q9H3H3 251 aaKnown RBP10.09□□□□□ -0.79
PTPN4-201ENST00000263708 FCMRO60667 390 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 GPX2P18283 190 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 HINT1P49773 126 aaPredicted RBP10.09□□□□□ -0.79
PTPN4-201ENST00000263708 SYS1Q8N2H4 156 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 OTOSQ8NHW6 89 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 HIGD1AQ9Y241 93 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 SMCHD1A6NHR9 2005 aa10.09□□□□□ -0.79
PTPN4-201ENST00000263708 BTAF1O14981 1849 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 ZAR1LA6NP61 321 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 ACAA1P09110 424 aaPredicted RBP10.08□□□□□ -0.8
PTPN4-201ENST00000263708 KIRREL2Q6UWL6 708 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 OR4D9Q8NGE8 314 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 PHLDA3Q9Y5J5 127 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 KLKB1P03952 638 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 TM4SF4P48230 202 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 FZD5Q13467 585 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 FAM53BQ14153 422 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 LRRC61Q9BV99 259 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 REG1BP48304 166 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 DLX6P56179 175 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms