RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CTIFO43310 598 aaKnown RBP12.54□□□□□ -0.4
USP28-201ENST00000003302 GRIN1Q05586 938 aa12.54□□□□□ -0.4
USP28-201ENST00000003302 ANKRD7Q92527 254 aa12.54□□□□□ -0.4
USP28-201ENST00000003302 ZNF215Q9UL58 517 aaPredicted RBP12.54□□□□□ -0.4
USP28-201ENST00000003302 HIP1O00291 1037 aa12.54□□□□□ -0.4
USP28-201ENST00000003302 HLFQ16534 295 aa12.54□□□□□ -0.4
USP28-201ENST00000003302 CLIC6Q96NY7 704 aa12.54□□□□□ -0.4
USP28-201ENST00000003302 DDX19AQ9NUU7 478 aaKnown RBP12.54□□□□□ -0.4
USP28-201ENST00000003302 ANKRD1Q15327 319 aa12.54□□□□□ -0.4
USP28-201ENST00000003302 FMR1NBQ8N0W7 255 aaPredicted RBP12.54□□□□□ -0.4
USP28-201ENST00000003302 WASHC4Q2M389 1173 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 PLBD2Q8NHP8 589 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 ALDH8A1Q9H2A2 487 aaPredicted RBP12.53□□□□□ -0.4
USP28-201ENST00000003302 EPC1Q9H2F5 836 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 PDCL2Q8N4E4 241 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 AGXT2Q9BYV1 514 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 U3KPZ7 1027 aaPredicted RBP12.53□□□□□ -0.4
USP28-201ENST00000003302 CDC27P30260 824 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 CYB5R4Q7L1T6 521 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 CCDC82Q8N4S0 544 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 ASAP1Q9ULH1 1129 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 COL18A1P39060 1754 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 CCDC69A6NI79 296 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 TBC1D10CQ8IV04 446 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 SH3TC1Q8TE82 1336 aa12.53□□□□□ -0.4
USP28-201ENST00000003302 SKILP12757 684 aa12.52□□□□□ -0.4
USP28-201ENST00000003302 ARMCX5Q6P1M9 558 aa12.52□□□□□ -0.4
USP28-201ENST00000003302 XAGE2Q96GT9 111 aa12.52□□□□□ -0.4
USP28-201ENST00000003302 KLF18A0A0U1RQI7 1052 aa12.52□□□□□ -0.41
USP28-201ENST00000003302 MCAMP43121 646 aa12.52□□□□□ -0.41
USP28-201ENST00000003302 TPD52L1Q16890 204 aaPredicted RBP12.52□□□□□ -0.41
USP28-201ENST00000003302 DCAF5Q96JK2 942 aa12.52□□□□□ -0.41
USP28-201ENST00000003302 TMX1Q9H3N1 280 aa12.52□□□□□ -0.41
USP28-201ENST00000003302 EVX2Q03828 476 aa12.52□□□□□ -0.41
USP28-201ENST00000003302 FOXP4Q8IVH2 680 aaPredicted RBP12.52□□□□□ -0.41
USP28-201ENST00000003302 EYA2O00167 538 aa12.52□□□□□ -0.41
USP28-201ENST00000003302 LMOD1P29536 600 aaPredicted RBP12.52□□□□□ -0.41
USP28-201ENST00000003302 HSPA2P54652 639 aa12.52□□□□□ -0.41
USP28-201ENST00000003302 XPO4Q9C0E2 1151 aaKnown RBP12.52□□□□□ -0.41
USP28-201ENST00000003302 LINC00301Q8NCQ3 95 aa12.51□□□□□ -0.41
USP28-201ENST00000003302 GUCY1A2P33402 732 aa12.51□□□□□ -0.41
USP28-201ENST00000003302 E4F1Q66K89 784 aaPredicted RBP12.51□□□□□ -0.41
USP28-201ENST00000003302 STRN4Q9NRL3 753 aa12.51□□□□□ -0.41
USP28-201ENST00000003302 STRCP1A6NGW2 1772 aa12.51□□□□□ -0.41
USP28-201ENST00000003302 NCAPHQ15003 741 aa12.51□□□□□ -0.41
USP28-201ENST00000003302 SEC31BQ9NQW1 1179 aa12.51□□□□□ -0.41
USP28-201ENST00000003302 TMEM232C9JQI7 657 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 ALS2Q96Q42 1657 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 GOLGA8BA8MQT2 603 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 RNF113AO15541 343 aaKnown RBP12.5□□□□□ -0.41
USP28-201ENST00000003302 PRC1O43663 620 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 BMP6P22004 513 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 KMT5BQ4FZB7 885 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 AXDND1Q5T1B0 1012 aaPredicted RBP12.5□□□□□ -0.41
USP28-201ENST00000003302 SLC4A9Q96Q91 983 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 GREM2Q9H772 168 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 CWC25Q9NXE8 425 aaPredicted RBP12.5□□□□□ -0.41
USP28-201ENST00000003302 IFNKQ9P0W0 207 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 TMEM94Q12767 1356 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 A0A0U1RQJ8 604 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 ATRIPQ8WXE1 791 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 ZKSCAN3Q9BRR0 538 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 OVOS2A0A0G2JMS6 1433 aa12.5□□□□□ -0.41
USP28-201ENST00000003302 FAM160A1Q05DH4 1040 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 ELF2Q15723 593 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 ZNF827Q17R98 1081 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 DNAJC10Q8IXB1 793 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 GRAMD1CQ8IYS0 662 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 KRT32Q14532 448 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 SLC51AQ86UW1 340 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 MB21D2Q8IYB1 491 aaPredicted RBP12.49□□□□□ -0.41
USP28-201ENST00000003302 PIH1D3Q9NQM4 214 aaKnown RBP12.49□□□□□ -0.41
USP28-201ENST00000003302 WWC3Q9ULE0 1092 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 GPAA1O43292 621 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 COBLO75128 1261 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 SMIM5Q71RC9 77 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 SDF4Q9BRK5 362 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 ZNF446Q9NWS9 450 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 CTNNA3Q9UI47 895 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 RANBP6O60518 1105 aaKnown RBP12.49□□□□□ -0.41
USP28-201ENST00000003302 PDE4BQ07343 736 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 PNOCQ13519 176 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 NYAP1Q6ZVC0 841 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
USP28-201ENST00000003302 ORC3Q9UBD5 711 aaPredicted RBP12.49□□□□□ -0.41
USP28-201ENST00000003302 AKAP11Q9UKA4 1901 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 hCG_1642624A0A1W2PR95 340 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 B4E1Z4 1266 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 TFRCP02786 760 aaKnown RBP12.48□□□□□ -0.41
USP28-201ENST00000003302 CASP1P29466 404 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 USP49Q70CQ1 688 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 SHISA4Q96DD7 197 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 DSCC1Q9BVC3 393 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 C19orf44Q9H6X5 657 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 GOLGA6L19H0YKK7 550 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 KINO60870 393 aaKnown RBP12.48□□□□□ -0.41
USP28-201ENST00000003302 CEP135Q66GS9 1140 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 FBXO38Q6PIJ6 1188 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 SHC4Q6S5L8 630 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 TOM1L2Q6ZVM7 507 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms