RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ERGIC1Q969X5 290 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 HIST1H2BAQ96A08 127 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 FAM46BQ96A09 425 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 IL4I1Q96RQ9 567 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 TSSK6Q9BXA6 273 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 C20orf85Q9H1P6 137 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 COA3Q9Y2R0 106 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 NF1P21359 2839 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 MALRD1Q5VYJ5 2156 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 A4D1N5 150 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 K7ERU9 68 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 PMS2P2O95744 297 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 MT-ND4LP03901 98 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 RAB5AP20339 215 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 OR3A2P47893 321 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 CRYBA4P53673 196 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 UCP2P55851 309 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF79Q15937 498 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 Q6ZVH6 145 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 TOMM5Q8N4H5 51 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF433Q8N7K0 673 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 SLC35G3Q8N808 338 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 OR1S1Q8NH92 325 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 MFSD8Q8NHS3 518 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 PRRC1Q96M27 445 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 CDH20Q9HBT6 801 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 GPR35Q9HC97 309 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 ENPP4Q9Y6X5 453 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 DSPPQ9NZW4 1301 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 IGLV3-32A0A0A0MS00 114 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 C3orf80F5H4A9 247 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 SPRY3O43610 288 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 SS18L1O75177 396 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 IGHG1P01857 330 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 DBHP09172 617 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 GABRB1P18505 474 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 RPS4Y1P22090 263 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 SLC2A5P22732 501 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 GABARAPL2P60520 117 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 HOXA4Q00056 320 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 PLP2Q04941 152 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 TAF13Q15543 124 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 NKAPLQ5M9Q1 402 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 CBLL1Q75N03 491 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 MUC15Q8N387 334 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 OR6N2Q8NGY6 317 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 ARL11Q969Q4 196 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 PINX1Q96BK5 328 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 PRSS27Q9BQR3 290 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 B3GAT2Q9NPZ5 323 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 DLL4Q9NR61 685 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 TAS2R5Q9NYW4 299 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 SS18L2Q9UHA2 77 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 MAGEL2Q9UJ55 1249 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 RCE1Q9Y256 329 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF281Q9Y2X9 895 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 WNK1Q9H4A3 2382 aa6.81□□□□□ -1.32
LIMCH1-219ENST00000514096 TRBV2A0A0J9YWF9 115 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 SEC14L6B5MCN3 397 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 FZD7O75084 574 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF432O94892 652 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 TBPP20226 339 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 CDX1P47902 265 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ERVFRD-1P60508 538 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 KHDC3LQ587J8 217 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 IDNKQ5T6J7 187 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF774Q6NX45 483 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF664Q8N3J9 261 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF525Q8N782 197 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 HOXB13Q92826 284 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 MCHR2Q969V1 340 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 TECTBQ96PL2 329 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 POLR2J2Q9GZM3 115 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 VNN3Q9NY84 501 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 B3GAT1Q9P2W7 334 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ST6GALNAC2Q9UJ37 374 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 B3GALT5Q9Y2C3 310 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 EXOSC1Q9Y3B2 195 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 PUS1Q9Y606 427 aaKnown RBP eCLIP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ARFGEF3Q5TH69 2177 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ANKRD20A5PA0PJZ0 165 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 LRP5LA4QPB2 252 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 TRAF3IP2O43734 574 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 CGAP01215 116 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 CRHP06850 196 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 CECR9P0C854 216 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 CXCL2P19875 107 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 CD40P25942 277 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 SLC6A6P31641 620 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 EVX1P49640 407 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 GZMMP51124 257 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 UBE2MP61081 183 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 GSG1Q2KHT4 349 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF684Q5T5D7 378 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ABHD12BQ7Z5M8 362 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 DEFB108BQ8NET1 73 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 OR10AD1Q8NGE0 317 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ABHD4Q8TB40 342 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 TMEM45BQ96B21 275 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 OR2M2Q96R28 347 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 193.6 ms