RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LOC107986453A0A1B0GWG9 222 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PRD5 423 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PRF3 423 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PRM7 423 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 DAPL1A0PJW8 107 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 CLPSL1A2RUU4 121 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 PRSS47A8MTI9 375 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 H3BNX3 289 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 H3BSH0 61 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 ANGPTL7O43827 346 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 ENTPD6O75354 484 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 TK1P04183 234 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 AMY2AP04746 511 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 CEBPDP49716 269 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 FUT6P51993 359 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 ERVK11-1P61568 191 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 SNRPGP62308 76 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 ACTA2P62736 377 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 ACTG2P63267 376 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 PRB3Q04118 309 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 CNN3Q15417 329 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 UBE2V2Q15819 145 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 ZIK1Q3SY52 487 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 MIDNQ504T8 468 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 TMEM244Q5VVB8 128 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 DHRS7BQ6IAN0 325 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 CALHM1Q8IU99 346 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 Q8IYB0 196 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 BATF2Q8N1L9 274 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 PRSS35Q8N3Z0 413 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 CBR4Q8N4T8 237 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 OR5R1Q8NH85 324 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 PP6455Q8WZ26 134 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 RNFT2Q96EX2 444 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 BORCS8Q96FH0 119 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 CEP19Q96LK0 163 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 C9orf16Q9BUW7 83 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 MLST8Q9BVC4 326 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 FAM234AQ9H0X4 552 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 OR14J1Q9UGF5 321 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 VPREB3Q9UKI3 123 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 RRP15Q9Y3B9 282 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 KIAA2026Q5HYC2 2103 aa5.54□□□□□ -1.52
CCDC88A-213ENST00000476903 IGKV1-27A0A075B6S5 117 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 E9PQ18 207 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 J3QRE1 110 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 K7N7A8 449 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 SLC16A6O15403 523 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 MPZL2O60487 215 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 SCGB1D2O95969 90 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 CYB5AP00167 134 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 ISG15P05161 165 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 CHRM2P08172 466 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 HTR1AP08908 422 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 PRKACBP22694 351 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 KIR3DL2P43630 455 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 ATP1B3P54709 279 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 TAF9Q16594 264 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 HCP5Q6MZN7 132 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 SLC25A26Q70HW3 274 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 UTS2BQ765I0 119 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 MKXQ8IYA7 352 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 ENTHD1Q8IYW4 607 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 RDH10Q8IZV5 341 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 PNKDQ8N490 385 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 ACBD7Q8N6N7 88 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 ASCC1Q8N9N2 400 aaKnown RBP5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 ZSCAN4Q8NAM6 433 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 BEND2Q8NDZ0 799 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 DNAAF1Q8NEP3 725 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 OR4M1Q8NGD0 313 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 OR2G2Q8NGZ5 317 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 SLAMF9Q96A28 289 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 C4orf36Q96KX1 117 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 MBOAT4Q96T53 435 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 CITED1Q99966 193 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 HEXA-AS1Q9H8Q6 139 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 MTCH1Q9NZJ7 389 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 EXOGQ9Y2C4 368 aaKnown RBP5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 GMPPBQ9Y5P6 360 aa5.53□□□□□ -1.52
CCDC88A-213ENST00000476903 TET2Q6N021 2002 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 TRBV2A0A0J9YWF9 115 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 H3BUX3 64 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 J3QLW9 94 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 EBAG9O00559 213 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 TIMM23O14925 209 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 CLPXO76031 633 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 FADS2O95864 444 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 HAND1O96004 215 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 RBP4P02753 201 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 RPSAP08865 295 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 OCM2P0CE71 109 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 OCMP0CE72 109 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 DBTP11182 482 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 PIPP12273 146 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 CCL3L1P16619 93 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF19P17023 458 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 GABRB1P18505 474 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ATF1P18846 271 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms