RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 MDH2P40926 338 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 SELENOPP49908 381 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 METAP1P53582 386 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 DMRTA2Q96SC8 542 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 LRFN3Q9BTN0 628 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 CNTD2Q9H8S5 307 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 SLX4Q8IY92 1834 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 A0A1B0GTH9 108 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 CTSDP07339 412 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 SDHBP21912 280 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 UQCRFS1P47985 274 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 IL24Q13007 206 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 C12orf54Q6X4T0 127 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 C9orf62Q8N4C0 152 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 OR10A7Q8NGE5 316 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 BCL2L2Q92843 193 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM56Q96MV1 263 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF107Q9UII5 783 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM210A6NLX4 147 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 ARG1P05089 322 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 POU2F2P09086 479 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 CD1BP29016 333 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 ASCL1P50553 236 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 YBX1P67809 324 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF770Q6IQ21 691 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 SPEM1Q8N4L4 309 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 OR2T6Q8NHC8 308 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 ADAT1Q9BUB4 502 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 VN1R1Q9GZP7 353 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 MIXL1Q9H2W2 232 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 FOXJ2Q9P0K8 574 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 SPINK4O60575 86 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 GCGP01275 180 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 LPAR6P43657 344 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 NSUN5P2Q63ZY6 315 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 TRAT1Q6PIZ9 186 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 KISS1RQ969F8 398 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 EID2BQ96D98 161 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 MRM2Q9UI43 246 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 TAF1P21675 1872 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 TGIF2-C20orf24A0A0A6YYL0 155 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 CTLA4P16410 223 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM33P57088 247 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 ZIC1Q15915 447 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 SPATA45Q537H7 98 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 OR10V1Q8NGI7 309 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 OR2T10Q8NGZ9 312 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 ISOC2Q96AB3 205 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 ANAPC16Q96DE5 110 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 MYH14Q7Z406 1995 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 OR5AC1P0C628 307 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 SMIM17P0DL12 118 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 OR3A4PP47883 348 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 IRF3Q14653 427 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 WFDC8Q8IUA0 241 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 NEIL1Q96FI4 390 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 MRGPRX3Q96LB0 322 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 PIPOXQ9P0Z9 390 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 MTCH2Q9Y6C9 303 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 LINC00862A6NCI5 91 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 CXorf65A6NEN9 183 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 SHISA8B8ZZ34 492 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 SLC17A3O00476 420 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 PLPP3O14495 311 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF737O75373 536 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 GABRG2P18507 467 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 SPATA46Q5T0L3 261 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 LIAT1Q6ZQX7 453 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 VN1R4Q7Z5H5 301 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 CACNG5Q9UF02 275 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 NPIPB8E9PQR5 432 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 PDE6DO43924 150 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF253O75346 499 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 PRSS1P07477 247 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 HOXC4P09017 264 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 CTSSP25774 331 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 CEACAM6P40199 344 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 SEZ6L2Q6UXD5 910 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 ADAT3Q96EY9 351 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 OPN4Q9UHM6 478 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 RREB1Q92766 1687 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 DLK1P80370 383 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 C20orf196Q8IYI0 205 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM116Q8NCL8 245 aa9.1□□□□□ -0.95
LIMCH1-203ENST00000396595 BTAF1O14981 1849 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 RBFOX3A6NFN3 312 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 H3BMH7 237 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF32P17041 273 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 RHOBP62745 196 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF124Q15973 351 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 WIPI1Q5MNZ9 446 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 SGK494Q96LW2 274 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM147Q9BVK8 224 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 TRPM3Q9HCF6 1732 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM238LA0A1B0GVL6 79 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 A6NJY4 79 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 B4DEV8 164 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF250P15622 560 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 CXCL3P19876 107 aa9.09□□□□□ -0.95
LIMCH1-203ENST00000396595 GCSHP23434 173 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms