RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.01■□□□□ 0.15
CCDC3-201ENST00000378825 GPR157Q5UAW9 335 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 C17orf78Q8N4C9 275 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BHQ93079 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 ZNF799Q96GE5 643 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BNQ99877 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 HIST1H2BMQ99879 126 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 GLRX2Q9NS18 164 aa16.01■□□□□ 0.15
CCDC3-201ENST00000378825 STRAPQ9Y3F4 350 aaKnown RBP16.01■□□□□ 0.15
CCDC3-201ENST00000378825 TRGC2P03986 189 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 RGS19P49795 217 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 SUMO3P55854 103 aaPredicted RBP16■□□□□ 0.15
CCDC3-201ENST00000378825 UBE2KP61086 200 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 C1QL4Q86Z23 238 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 FBXL14Q8N1E6 418 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 CHRNA10Q9GZZ6 450 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 MSR1P21757 451 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 AADACP22760 399 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 MAS1LP35410 378 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 AFF3P51826 1226 aaKnown RBP16■□□□□ 0.15
CCDC3-201ENST00000378825 KCNMB1Q16558 191 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 OR2C3Q8N628 320 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 OR4D5Q8NGN0 318 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 NABP1Q96AH0 204 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 PRDM13Q9H4Q3 707 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 SLC7A11Q9UPY5 501 aa16■□□□□ 0.15
CCDC3-201ENST00000378825 SSSCA1O60232 199 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 TMEM50AO95807 157 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 SRP19P09132 144 aaKnown RBP15.99■□□□□ 0.15
CCDC3-201ENST00000378825 RNF224P0DH78 156 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 MDKP21741 143 aaPredicted RBP15.99■□□□□ 0.15
CCDC3-201ENST00000378825 RAB1AP62820 205 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 C4orf17Q53FE4 359 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 HIKESHIQ53FT3 197 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 ODF3L1Q8IXM7 274 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 CADM4Q8NFZ8 388 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 OR2M3Q8NG83 312 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 PP6455Q8WZ26 134 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 GAR1Q9NY12 217 aaKnown RBP15.99■□□□□ 0.15
CCDC3-201ENST00000378825 TREM2Q9NZC2 230 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 G3V3Y1 287 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 ETV2O00321 342 aaPredicted RBP15.99■□□□□ 0.15
CCDC3-201ENST00000378825 YKT6O15498 198 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 TNFSF12O43508 249 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 GATCO43716 136 aaKnown RBP15.99■□□□□ 0.15
CCDC3-201ENST00000378825 PLA2G5P39877 138 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 ECI1P42126 302 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 IL13RA2Q14627 380 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 FSCN3Q9NQT6 498 aa15.99■□□□□ 0.15
CCDC3-201ENST00000378825 A0A0U1RQV5 110 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 WRBO00258 174 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 CYB5BO43169 146 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 GLB1P16278 677 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 GJC3Q8NFK1 279 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 AKIRIN1Q9H9L7 192 aaPredicted RBP15.98■□□□□ 0.15
CCDC3-201ENST00000378825 P4HTMQ9NXG6 502 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 NOSIPQ9Y314 301 aaKnown RBP15.98■□□□□ 0.15
CCDC3-201ENST00000378825 AQP7P3A6NL99 342 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 PROB1E7EW31 1015 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 ZNF133P52736 654 aaPredicted RBP15.98■□□□□ 0.15
CCDC3-201ENST00000378825 ICAM4Q14773 271 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 ZNF429Q86V71 674 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 LGI3Q8N145 548 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 ZNF610Q8N9Z0 462 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 OR5C1Q8NGR4 320 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 NAT6Q93015 286 aa15.98■□□□□ 0.15
CCDC3-201ENST00000378825 UBE2ZQ9H832 354 aaPredicted RBP15.98■□□□□ 0.15
CCDC3-201ENST00000378825 BCAT2O15382 392 aaPredicted RBP15.97■□□□□ 0.15
CCDC3-201ENST00000378825 CD63P08962 238 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 CTSSP25774 331 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 S100A2P29034 98 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 PPA1Q15181 289 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 CCDC54Q8NEL0 328 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 SUCNR1Q9BXA5 334 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 METTL9Q9H1A3 318 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 PRO1933Q9H354 126 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 CA11O75493 328 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 CELA2AP08217 269 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 GAMTQ14353 236 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 GNMTQ14749 295 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 KHDC3LQ587J8 217 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 SLC25A53Q5H9E4 307 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 LRTM2Q8N967 370 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 C11orf1Q9H5F2 150 aa15.97■□□□□ 0.15
CCDC3-201ENST00000378825 A0A1B0GV90 55 aa15.96■□□□□ 0.15
CCDC3-201ENST00000378825 GUCA1AP43080 201 aaPredicted RBP15.96■□□□□ 0.15
CCDC3-201ENST00000378825 MYOTQ9UBF9 498 aa15.96■□□□□ 0.15
CCDC3-201ENST00000378825 DYNLT3P51808 116 aa15.96■□□□□ 0.15
CCDC3-201ENST00000378825 DEFA6Q01524 100 aa15.96■□□□□ 0.15
CCDC3-201ENST00000378825 C14orf144Q96I85 54 aa15.96■□□□□ 0.15
CCDC3-201ENST00000378825 TMEM252Q8N6L7 170 aa15.96■□□□□ 0.14
CCDC3-201ENST00000378825 OR14L1PQ8NHC6 308 aa15.96■□□□□ 0.14
CCDC3-201ENST00000378825 INTS12Q96CB8 462 aaKnown RBP15.96■□□□□ 0.14
CCDC3-201ENST00000378825 ST3GAL6Q9Y274 331 aa15.96■□□□□ 0.14
CCDC3-201ENST00000378825 ARHGAP21Q5T5U3 1957 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 H3BP45 60 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 SCAF4O95104 1147 aaKnown RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 OTX1P32242 354 aaPredicted RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 LSM6P62312 80 aaKnown RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF154Q13106 437 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms