RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CHI3L2Q15782 390 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 GABRA6Q16445 453 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 NRF1Q16656 503 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 GGTA1PQ4G0N0 100 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SPIN4Q56A73 249 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 CDKL4Q5MAI5 379 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 TIMM23BQ5SRD1 257 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 PHYHD1Q5SRE7 291 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 LIPNQ5VXI9 398 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SLX4IPQ5VYV7 408 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 FBXW9Q5XUX1 488 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 OR4F3Q6IEY1 312 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 NOXRED1Q6NXP6 359 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 FAHD2BQ6P2I3 314 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 NIPAL3Q6P499 406 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 BTNL3Q6UXE8 466 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SYT10Q6XYQ8 523 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 Q6ZT83 130 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 NET1Q7Z628 596 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 MDP1Q86V88 176 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 MMGT1Q8N4V1 131 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ANKFN1Q8N957 763 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ZDHHC22Q8N966 263 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SPATA4Q8NEY3 305 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 RHEBL1Q8TAI7 183 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 CPNE4Q96A23 557 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SLC25A36Q96CQ1 311 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 FAHD2AQ96GK7 314 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 PKNOX2Q96KN3 472 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SLC35G5Q96KT7 338 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SLC38A2Q96QD8 506 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 OR7D2Q96RA2 312 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ZNF382Q96SR6 550 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 MRPL57Q9BQC6 102 aaKnown RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 MRPL37Q9BZE1 423 aaKnown RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 OR51I1Q9H343 314 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SLC17A5Q9NRA2 495 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SDHAF3Q9NRP4 125 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 FAIMQ9NVQ4 179 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 NECAP2Q9NVZ3 263 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 UBAP1Q9NZ09 502 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SLC17A7Q9P2U7 560 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 GHRLQ9UBU3 117 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 PSME2Q9UL46 239 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SAR1BQ9Y6B6 198 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 HEATR5AQ86XA9 2040 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 SACSQ9NZJ4 4579 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 A0A087WZY1 265 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TMED7-TICAM2A0A0A6YYA0 188 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 IGHV2OR16-5A0A0B4J2B6 119 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TRBV2A0A0J9YWF9 115 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 RNF103-CHMP3A0A140T963 221 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 H7C417 338 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 M0R3G1 203 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 LSM1O15116 133 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 SCAMP2O15127 329 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 EIF3HO15372 352 aaKnown RBP eCLIP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF264O43296 627 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 MRPL33O75394 65 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 UGT2B17O75795 530 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 MMP23AO75900 390 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 BCAS2O75934 225 aaPredicted RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CSTAP01040 98 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CD55P08174 381 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 RBP1P09455 135 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 THRBP10828 461 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 MYL2P10916 166 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CD79AP11912 226 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TAC1P20366 129 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 ELK4P28324 431 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 HTR1FP30939 366 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 HPCAL1P37235 193 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CDKN2CP42773 168 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 GPR6P46095 362 aaPredicted RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 HTR5AP47898 357 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 IDH2P48735 452 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 CCT3P49368 545 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 PSMD4P55036 377 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 DLX1P56177 255 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 UBE2NP61088 152 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 UBA52P62987 128 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 HBA1P69905 142 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 DAZ2Q13117 558 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 BIKQ13323 160 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 SYPL1Q16563 259 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF311Q5JNZ3 666 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TMEM255AQ5JRV8 349 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 MRPL2Q5T653 305 aaKnown RBP1.9□□□□□ -2.11
SCFD1-219ENST00000556413 C8orf74Q6P047 294 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 C3orf33Q6P1S2 294 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 FAM159AQ6UWV7 190 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 ZYG11AQ6WRX3 759 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF836Q6ZNA1 936 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 TMPPEQ6ZT21 453 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 AAED1Q7RTV5 226 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 COMTD1Q86VU5 262 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 VRK2Q86Y07 508 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 C10orf107Q8IVU9 208 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 PDZD9Q8IXQ8 264 aa1.9□□□□□ -2.11
SCFD1-219ENST00000556413 BPIFB2Q8N4F0 458 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms