RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 FAM96BQ9Y3D0 163 aa15.03■□□□□ -0
CLN3-202ENST00000355477 H0YAE9 185 aa15.02■□□□□ -0
CLN3-202ENST00000355477 K7N7A8 449 aa15.02■□□□□ -0
CLN3-202ENST00000355477 CLIC3O95833 236 aa15.02■□□□□ -0
CLN3-202ENST00000355477 ZNF20P17024 532 aa15.02■□□□□ -0
CLN3-202ENST00000355477 EEF1B2P24534 225 aaKnown RBP15.02■□□□□ -0
CLN3-202ENST00000355477 AZGP1P25311 298 aaKnown RBP15.02■□□□□ -0
CLN3-202ENST00000355477 SAA4P35542 130 aa15.02■□□□□ -0
CLN3-202ENST00000355477 RBP2P50120 134 aa15.02■□□□□ -0
CLN3-202ENST00000355477 ATP1B3P54709 279 aa15.02■□□□□ -0
CLN3-202ENST00000355477 ERVFRD-1P60508 538 aa15.02■□□□□ -0
CLN3-202ENST00000355477 BLMHQ13867 455 aa15.02■□□□□ -0
CLN3-202ENST00000355477 ZSCAN26Q16670 478 aa15.02■□□□□ -0
CLN3-202ENST00000355477 LPCAT4Q643R3 524 aa15.02■□□□□ -0
CLN3-202ENST00000355477 EGFL6Q8IUX8 553 aa15.02■□□□□ -0
CLN3-202ENST00000355477 MKXQ8IYA7 352 aa15.02■□□□□ -0
CLN3-202ENST00000355477 SYS1Q8N2H4 156 aa15.02■□□□□ -0
CLN3-202ENST00000355477 ZNF676Q8N7Q3 588 aa15.02■□□□□ -0
CLN3-202ENST00000355477 ZNF555Q8NEP9 628 aa15.02■□□□□ -0
CLN3-202ENST00000355477 OR13C3Q8NGS6 347 aa15.02■□□□□ -0
CLN3-202ENST00000355477 INPP5EQ9NRR6 644 aa15.02■□□□□ -0
CLN3-202ENST00000355477 C1RLQ9NZP8 487 aa15.02■□□□□ -0
CLN3-202ENST00000355477 RPL36Q9Y3U8 105 aaKnown RBP15.02■□□□□ -0
CLN3-202ENST00000355477 MEIOCA2RUB1 952 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 ZNF737O75373 536 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 CHRM2P08172 466 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 CCL3L1P16619 93 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 BCL3P20749 454 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 PRKACBP22694 351 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 MTCP1P56278 107 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 ZNF273Q14593 569 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 NCR3LG1Q68D85 454 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 MRPL48Q96GC5 212 aaKnown RBP15.01□□□□□ -0.01
CLN3-202ENST00000355477 RDH12Q96NR8 316 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 FAM234AQ9H0X4 552 aa15.01□□□□□ -0.01
CLN3-202ENST00000355477 RBFOX1Q9NWB1 397 aaKnown RBP15.01□□□□□ -0.01
CLN3-202ENST00000355477 MEX3AA1L020 520 aaKnown RBP15□□□□□ -0.01
CLN3-202ENST00000355477 SPRY1O43609 319 aaPredicted RBP15□□□□□ -0.01
CLN3-202ENST00000355477 ZFPL1O95159 310 aa15□□□□□ -0.01
CLN3-202ENST00000355477 CRYBA1P05813 215 aa15□□□□□ -0.01
CLN3-202ENST00000355477 FBP1P09467 338 aa15□□□□□ -0.01
CLN3-202ENST00000355477 LIMS3P0CW19 117 aa15□□□□□ -0.01
CLN3-202ENST00000355477 LIMS4P0CW20 117 aa15□□□□□ -0.01
CLN3-202ENST00000355477 CALCBP10092 127 aa15□□□□□ -0.01
CLN3-202ENST00000355477 PIPP12273 146 aaPredicted RBP15□□□□□ -0.01
CLN3-202ENST00000355477 POU3F4P49335 361 aa15□□□□□ -0.01
CLN3-202ENST00000355477 TAF9Q16594 264 aa15□□□□□ -0.01
CLN3-202ENST00000355477 KLHL22Q53GT1 634 aa15□□□□□ -0.01
CLN3-202ENST00000355477 CRIP3Q6Q6R5 217 aa15□□□□□ -0.01
CLN3-202ENST00000355477 ASCC1Q8N9N2 400 aaKnown RBP15□□□□□ -0.01
CLN3-202ENST00000355477 OR5D13Q8NGL4 314 aa15□□□□□ -0.01
CLN3-202ENST00000355477 CNIH3Q8TBE1 160 aa15□□□□□ -0.01
CLN3-202ENST00000355477 C17orf50Q8WW18 174 aa15□□□□□ -0.01
CLN3-202ENST00000355477 EMG1Q92979 244 aaKnown RBP15□□□□□ -0.01
CLN3-202ENST00000355477 RFT1Q96AA3 541 aa15□□□□□ -0.01
CLN3-202ENST00000355477 AJUBAQ96IF1 538 aa15□□□□□ -0.01
CLN3-202ENST00000355477 OPALINQ96PE5 141 aa15□□□□□ -0.01
CLN3-202ENST00000355477 SPACA5Q96QH8 159 aa15□□□□□ -0.01
CLN3-202ENST00000355477 MYCBPQ99417 103 aaPredicted RBP15□□□□□ -0.01
CLN3-202ENST00000355477 FGF20Q9NP95 211 aaPredicted RBP15□□□□□ -0.01
CLN3-202ENST00000355477 ZNRD1Q9P1U0 126 aa15□□□□□ -0.01
CLN3-202ENST00000355477 CAB39Q9Y376 341 aaPredicted RBP15□□□□□ -0.01
CLN3-202ENST00000355477 TMEM82A0PJX8 343 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 POM121CA8CG34 1229 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 ANGPTL7O43827 346 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 GPR137BO60478 399 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 DUSP1P28562 367 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 GTF2A1P52655 376 aaPredicted RBP14.99□□□□□ -0.01
CLN3-202ENST00000355477 DLX6P56179 175 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 ACSM1Q08AH1 577 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 PDZK1IP1Q13113 114 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 RCN1Q15293 331 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 ZNF691Q5VV52 312 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 SHISA2Q6UWI4 295 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 C17orf107Q6ZR85 190 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 LHFPL2Q6ZUX7 228 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 OR13C9Q8NGT0 318 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 DYRK2Q92630 601 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 PDCD1LG2Q9BQ51 273 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 SF3B6Q9Y3B4 125 aaKnown RBP14.99□□□□□ -0.01
CLN3-202ENST00000355477 MMP24Q9Y5R2 645 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 VWFP04275 2813 aa14.99□□□□□ -0.01
CLN3-202ENST00000355477 IGKV1-12A0A0C4DH73 117 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 HAND1O96004 215 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 IGKV1D-12P01611 117 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 MT-ND2P03891 347 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 PEX2P28328 305 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 ETV1P50549 477 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 GBX2P52951 348 aaPredicted RBP14.98□□□□□ -0.01
CLN3-202ENST00000355477 RAG2P55895 527 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 Q8IYB0 196 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 OR8H2Q8N162 312 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 FAM58AQ8N1B3 248 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 OR52N4Q8NGI2 321 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 OR5AK2Q8NH90 309 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 CYGBQ8WWM9 190 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 SPSB1Q96BD6 273 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 JAM3Q9BX67 310 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 DPAGT1Q9H3H5 408 aa14.98□□□□□ -0.01
CLN3-202ENST00000355477 ZCCHC4Q9H5U6 513 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms