RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 R4GMQ9 66 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 TET2Q6N021 2002 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 RNASEK-C17orf49H0YIS7 233 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 XRCC2O43543 280 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 FBP1P09467 338 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 LIMS3P0CW19 117 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 LIMS4P0CW20 117 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 C21orf33P30042 268 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 TGFBR2P37173 567 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 GBX2P52951 348 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 SLC35A2P78381 396 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 MRPL28Q13084 256 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 FAM189A2Q15884 450 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 TIGD6Q17RP2 521 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 GFOD2Q3B7J2 385 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 C11orf91Q3C1V1 193 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 BCL2L15Q5TBC7 163 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 EGFL6Q8IUX8 553 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 SEH1LQ96EE3 360 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 CCL13Q99616 98 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 DUSP21Q9H596 190 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 MOB1AQ9H8S9 216 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 TRIM36Q9NQ86 728 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 SIRT7Q9NRC8 400 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 ONECUT1Q9UBC0 465 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 FBLN5Q9UBX5 448 aa13.47□□□□□ -0.25
SHKBP1-215ENST00000597649 A0A1B0GVI7 797 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 GPR37O15354 613 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 PIN1P1O15428 100 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 HTR1AP08908 422 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 AMY2BP19961 511 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 KLRD1Q13241 179 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 HERPUD1Q15011 391 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 METAP1DQ6UB28 335 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 COMMD2Q86X83 199 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 C11orf44Q8N8P7 122 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 HAVCR2Q8TDQ0 301 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 NPRL2Q8WTW4 380 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 TNFRSF14Q92956 283 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 PBOV1Q9GZY1 135 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 PPA2Q9H2U2 334 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 ISG20L2Q9H9L3 353 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 FAM206AQ9NX38 181 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 MRPL15Q9P015 296 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 CLEC2DQ9UHP7 191 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 OR52A1Q9UKL2 312 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 FOXJ3Q9UPW0 622 aa13.46□□□□□ -0.25
SHKBP1-215ENST00000597649 GGT3PA6NGU5 568 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 A6NLC8 198 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 NPFFO15130 113 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 CFL1P23528 166 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 GABARAPL2P60520 117 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 MFGE8Q08431 387 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 WDR38Q5JTN6 314 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 GLYATL3Q5SZD4 288 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 OR2G6Q5TZ20 316 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 C1orf122Q6ZSJ8 110 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 PRSS45Q7RTY3 260 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 WDR86Q86TI4 376 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 FAM216BQ8N7L0 139 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 OR52N1Q8NH53 320 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 RORBQ92753 470 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 ZNF649Q9BS31 505 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 MND1Q9BWT6 205 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 CDCA4Q9BXL8 241 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 RGCCQ9H4X1 137 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 OPA3Q9H6K4 179 aa13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 PAK1IP1Q9NWT1 392 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 NOP16Q9Y3C1 178 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-215ENST00000597649 hCG_1807616A0A1W2PRN6 198 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 BTBD17A6NE02 478 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 MT-ND2P03891 347 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 GABRA5P31644 462 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 EFNB2P52799 333 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 RNLSQ5VYX0 342 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 PRSS48Q7RTY5 328 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 CATSPERDQ86XM0 798 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 OR8B12Q8NGG6 310 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 C17orf50Q8WW18 174 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 CFHR4Q92496 578 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 SGCDQ92629 289 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 SGK3Q96BR1 496 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 ITPKCQ96DU7 683 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 PELI1Q96FA3 418 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 REEP6Q96HR9 211 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 PPP1R3EQ9H7J1 279 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 BABAM2Q9NXR7 383 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 NUFIP1Q9UHK0 495 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 ZNF391Q9UJN7 358 aa13.44□□□□□ -0.26
SHKBP1-215ENST00000597649 MEGF11A6BM72 1044 aa13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 ANKRD61A6NGH8 418 aa13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 MRPS14O60783 128 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 SRSF10O75494 262 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 SELLP14151 372 aa13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 WNT4P56705 351 aa13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 ALKBH1Q13686 389 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 ODF4Q2M2E3 257 aa13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 OXLD1Q5BKU9 147 aa13.43□□□□□ -0.26
SHKBP1-215ENST00000597649 Q6ZTK2 550 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms