RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ZNF48Q96MX3 618 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 WDFY2Q96P53 400 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX5Q96PT3 197 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 HIST1H2AAQ96QV6 131 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 CNN2Q99439 309 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 TEAD3Q99594 435 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 PKP2Q99959 881 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 PPP1R3EQ9H7J1 279 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 SMURF1Q9HCE7 757 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 FAM206AQ9NX38 181 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 H2AFY2Q9P0M6 372 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 DNAJB11Q9UBS4 358 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ENOPH1Q9UHY7 261 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 AP4S1Q9Y587 144 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 NKX6-3A6NJ46 265 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 ZAR1LA6NP61 321 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 SRRM5B3KS81 715 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 PSMD9O00233 223 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 BAG2O95816 211 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 SFTPBP07988 381 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 HKR1P10072 659 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 MMP9P14780 707 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 ATP6V1B1P15313 513 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 DCTDP32321 178 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 GPM6AP51674 278 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 RIDAP52758 137 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 ACTR3P61158 418 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 GNG3P63215 75 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 ROM1Q03395 351 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 PDCD1Q15116 288 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 SLC9A3R2Q15599 337 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 LRRC10Q5BKY1 277 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 FAM76BQ5HYJ3 339 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 WDR38Q5JTN6 314 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 SLX4IPQ5VYV7 408 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 NXNL2Q5VZ03 156 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 C12orf73Q69YU5 71 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 STUMQ69YW2 141 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 KDM4DQ6B0I6 523 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 BRD3OSQ6XYD6 125 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 BTN2A1Q7KYR7 527 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 MEPCEQ7L2J0 689 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 KRT74Q7RTS7 529 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 GID4Q8IVV7 300 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 ZDHHC23Q8IYP9 409 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF679Q8IYX0 411 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 TCEANCQ8N8B7 351 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 NKAIN3Q8N8D7 197 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 SCCPDHQ8NBX0 429 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 OR10Z1Q8NGY1 313 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 TMEM163Q8TC26 289 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 HPSE2Q8WWQ2 592 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 RPL3LQ92901 407 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 RNF170Q96K19 258 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 OR8B4Q96RC9 309 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 MNTQ99583 582 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 CCL13Q99616 98 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 PBOV1Q9GZY1 135 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 GABARAPL1Q9H0R8 117 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 DNTTIP1Q9H147 329 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 MOB1AQ9H8S9 216 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 NOX4Q9NPH5 578 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 HAO2Q9NYQ3 351 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 RPUSD1Q9UJJ7 312 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 IKZF2Q9UKS7 526 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 TENM1Q9UKZ4 2725 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 COPS3Q9UNS2 423 aa5.61□□□□□ -1.51
CCDC88A-213ENST00000476903 IGHV1-69DA0A0B4J2H0 117 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 A0A1B0GVI7 797 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 MDFIC2A0A1B0GVS7 189 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 A0A1B0GW55 424 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 OR5B21A6NL26 309 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 PRR32B1ATL7 298 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF670-ZNF695F2Z2N8 137 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 M0R129 80 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 HOXA3O43365 443 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 NDUFB3O43676 98 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 MITFO75030 526 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 MTRF1O75570 445 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 FCN3O75636 299 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CIB2O75838 187 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DHRS3O75911 302 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 IGLV3-1P01715 115 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 IGHV1-69P01742 117 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4L2P0CJ85 424 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4L3P0CJ86 424 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4L4P0CJ87 422 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4L5P0CJ88 424 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4L6P0CJ89 424 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4L7P0CJ90 424 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 GMFBP60983 142 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CXCR4P61073 352 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 EFNB1P98172 346 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 MFGE8Q08431 387 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 RIPPLY1Q0D2K3 151 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DEFB112Q30KQ8 113 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CEACAM21Q3KPI0 293 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CDONQ4KMG0 1287 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CEP78Q5JTW2 689 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms