RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ARSBP15848 533 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 IGFBP2P18065 325 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 ADRA2CP18825 462 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 SRP9P49458 86 aaKnown RBP12.13□□□□□ -0.47
SKA1-202ENST00000398452 ZNF81P51508 661 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 GPM6AP51674 278 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 ALKBH6Q3KRA9 238 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 ASPHD2Q6ICH7 369 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 KRT74Q7RTS7 529 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 LRP11Q86VZ4 500 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 ANGPTL5Q86XS5 388 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 MUC15Q8N387 334 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 OR2Z1Q8NG97 314 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 OR5P3Q8WZ94 311 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 PHF21AQ96BD5 680 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 SPACA5Q96QH8 159 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 SMURF1Q9HCE7 757 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 MSL2Q9HCI7 577 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 COMMD3Q9UBI1 195 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 GHRLQ9UBU3 117 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 ZDHHC8Q9ULC8 765 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 ING4Q9UNL4 249 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 MRPS28Q9Y2Q9 187 aaKnown RBP12.13□□□□□ -0.47
SKA1-202ENST00000398452 HCFC1P51610 2035 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 A6NNC1 897 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 FAM25AB3EWG3 89 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 FAM25CB3EWG5 89 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 FAM25GB3EWG6 89 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 ZNF780AO75290 641 aaPredicted RBP12.12□□□□□ -0.47
SKA1-202ENST00000398452 CSTBP04080 98 aaKnown RBP12.12□□□□□ -0.47
SKA1-202ENST00000398452 SLC2A2P11168 524 aaPredicted RBP12.12□□□□□ -0.47
SKA1-202ENST00000398452 TALDO1P37837 337 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 HAAOP46952 286 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 SCAND1P57086 179 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 GPR176Q14439 515 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 P2RY14Q15391 338 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 FAM189A2Q15884 450 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 DMRTC1Q5HYR2 192 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 C1orf100Q5SVJ3 147 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 AGAP6Q5VW22 663 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 MKXQ8IYA7 352 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 DVL3Q92997 716 aaPredicted RBP12.12□□□□□ -0.47
SKA1-202ENST00000398452 RFT1Q96AA3 541 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 ITPKCQ96DU7 683 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 ELMOD3Q96FG2 381 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 TMEM204Q9BSN7 226 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 SLIRPQ9GZT3 109 aaKnown RBP12.12□□□□□ -0.47
SKA1-202ENST00000398452 CST11Q9H112 138 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 METTL9Q9H1A3 318 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 MS4A5Q9H3V2 200 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 CNTD2Q9H8S5 307 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 LIN7BQ9HAP6 207 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 POLDIP2Q9Y2S7 368 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 ETV7Q9Y603 341 aa12.12□□□□□ -0.47
SKA1-202ENST00000398452 A0A0G2JK05 382 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 PQLC2LA1A4F0 135 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 LRP5LA4QPB2 252 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 A6NLC8 198 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 SIAH2O43255 324 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 SPRY3O43610 288 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 KDM4BO94953 1096 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 BPNT1O95861 308 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 PLAUP00749 431 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 PLATP00750 562 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 PTGFRP43088 359 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 ALDH3B1P43353 468 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 RSU1Q15404 277 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 EFNB3Q15768 340 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 GLIPR1L1Q6UWM5 242 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 OR10AD1Q8NGE0 317 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 OR5D18Q8NGL1 313 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 NEUROG1Q92886 237 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 FAM3DQ96BQ1 224 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 TSC22D3Q99576 134 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 BARHL1Q9BZE3 327 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 EGLN1Q9GZT9 426 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 DECR2Q9NUI1 292 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 PMF1-BGLAPU3KQ54 211 aa12.11□□□□□ -0.47
SKA1-202ENST00000398452 LOC100289279A0A1B0GTE1 492 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 TRAPPC2LH3BP13 241 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 HS3ST1O14792 307 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 LILRA1O75019 489 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 GRPP07492 148 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 SNRPBP14678 240 aaKnown RBP12.1□□□□□ -0.47
SKA1-202ENST00000398452 TNFRSF1AP19438 455 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 OR3A4PP47883 348 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 MMP15P51511 669 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 CLDN12P56749 244 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 TNFAIP6P98066 277 aaPredicted RBP12.1□□□□□ -0.47
SKA1-202ENST00000398452 HAGHLQ6PII5 290 aaPredicted RBP12.1□□□□□ -0.47
SKA1-202ENST00000398452 NR2C2APQ86WQ0 139 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 ZNF611Q8N823 705 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 SAMD12Q8N8I0 201 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 ZSCAN4Q8NAM6 433 aaPredicted RBP12.1□□□□□ -0.47
SKA1-202ENST00000398452 LGALS14Q8TCE9 139 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 HPSE2Q8WWQ2 592 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 GFI1Q99684 422 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 MYEF2Q9P2K5 600 aaKnown RBP12.1□□□□□ -0.47
SKA1-202ENST00000398452 SPATA2Q9UM82 520 aa12.1□□□□□ -0.47
SKA1-202ENST00000398452 PRR14LQ5THK1 2151 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms