RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SFTPBP07988 381 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 ATP6V1B1P15313 513 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 FAHP16930 419 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 UBA52P62987 128 aaKnown RBP15.22■□□□□ 0.03
CLN3-202ENST00000355477 RIPPLY1Q0D2K3 151 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 CEACAM21Q3KPI0 293 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 BTN2A1Q7KYR7 527 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 OR8J1Q8NGP2 316 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 OR10Z1Q8NGY1 313 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 C1orf147Q96MC9 270 aaPredicted RBP15.22■□□□□ 0.03
CLN3-202ENST00000355477 DUX5Q96PT3 197 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 HIST1H2AAQ96QV6 131 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 OR51I2Q9H344 312 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 SNTG1Q9NSN8 517 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 OR52A1Q9UKL2 312 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 PIGLQ9Y2B2 252 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 R4GMQ9 66 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 A0A1B0GTI1 187 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 ZNF879B4DU55 563 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 ZNF732B4DXR9 585 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 EI24O14681 340 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 RHBDL1O75783 438 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 DHRS3O75911 302 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 ZNF684Q5T5D7 378 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 BCL2L15Q5TBC7 163 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 STUMQ69YW2 141 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 ZFP1Q6P2D0 407 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 RBMS3Q6XE24 437 aaKnown RBP15.21■□□□□ 0.03
CLN3-202ENST00000355477 BRD3OSQ6XYD6 125 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 C9orf139Q6ZV77 190 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 MOB3CQ70IA8 216 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 THAP5Q7Z6K1 395 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 ELMOD2Q8IZ81 293 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 FAM216BQ8N7L0 139 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 ST8SIA4Q92187 359 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 ITFG2Q969R8 447 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 C12orf43Q96C57 262 aaKnown RBP15.21■□□□□ 0.03
CLN3-202ENST00000355477 RAB3IPQ96QF0 476 aaPredicted RBP15.21■□□□□ 0.03
CLN3-202ENST00000355477 TBX15Q96SF7 602 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 PCGF1Q9BSM1 259 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 SLC22A13Q9Y226 551 aa15.21■□□□□ 0.03
CLN3-202ENST00000355477 E9PQ18 207 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 P2RY10O00398 339 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 RPP14O95059 124 aaKnown RBP15.2■□□□□ 0.02
CLN3-202ENST00000355477 LIPFP07098 398 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 OR2T7P0C7T2 308 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 MMP9P14780 707 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 TGM4P49221 684 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 GNG3P63215 75 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 ACTG1P63261 375 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 ZIK1Q3SY52 487 aaPredicted RBP15.2■□□□□ 0.02
CLN3-202ENST00000355477 ATPAF1Q5TC12 328 aaPredicted RBP15.2■□□□□ 0.02
CLN3-202ENST00000355477 ZBTB37Q5TC79 503 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 YIPF7Q8N8F6 280 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 PNLDC1Q8NA58 520 aaKnown RBP15.2■□□□□ 0.02
CLN3-202ENST00000355477 OR10H4Q8NGA5 316 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 OR5A2Q8NGI9 324 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 OR2T27Q8NH04 317 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 HRASLS5Q96KN8 279 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 MOB1AQ9H8S9 216 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 USE1Q9NZ43 259 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 ENPP5Q9UJA9 477 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 SNX5Q9Y5X3 404 aa15.2■□□□□ 0.02
CLN3-202ENST00000355477 TMEM89A2RUT3 159 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 DNAJC9-AS1A6NH13 148 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 A6NIN4 97 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 TOX4O94842 621 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 ECDO95905 644 aaPredicted RBP15.19■□□□□ 0.02
CLN3-202ENST00000355477 NRASP01111 189 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 KRT8P05787 483 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 SELLP14151 372 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 CDC42P60953 191 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 ARF6P62330 175 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 BAMBIQ13145 260 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 IKZF1Q13422 519 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 PLCXD3Q63HM9 321 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 C12orf54Q6X4T0 127 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 SLC36A1Q7Z2H8 476 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 CBR4Q8N4T8 237 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 OR14K1Q8NGZ2 314 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 GCDHQ92947 438 aaPredicted RBP15.19■□□□□ 0.02
CLN3-202ENST00000355477 WDFY2Q96P53 400 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 SIRPDQ9H106 197 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 DNAJB11Q9UBS4 358 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 RPUSD1Q9UJJ7 312 aaKnown RBP15.19■□□□□ 0.02
CLN3-202ENST00000355477 V9GYS6 101 aa15.19■□□□□ 0.02
CLN3-202ENST00000355477 MDFIC2A0A1B0GVS7 189 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 METTL15A6NJ78 407 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 EBAG9O00559 213 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 ENTPD6O75354 484 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 MTRF1O75570 445 aaKnown RBP15.18■□□□□ 0.02
CLN3-202ENST00000355477 PRTN3P24158 256 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 COMPP49747 757 aaPredicted RBP15.18■□□□□ 0.02
CLN3-202ENST00000355477 ALDH3A2P51648 485 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 ZNF85Q03923 595 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 TMED1Q13445 227 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 ODF4Q2M2E3 257 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 C11orf91Q3C1V1 193 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 RUSC1-AS1Q66K80 236 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 TMEM42Q69YG0 159 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms