RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 NAGKQ9UJ70 344 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 SUMO3P55854 103 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-201ENST00000359947 PABPC1L2AQ5JQF8 200 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 BHLHA15Q7RTS1 189 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-201ENST00000359947 SVILO95425 2214 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 C20orf202A1L168 122 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 TMPRSS11FQ6ZWK6 438 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 DPF1Q92782 380 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 TMPRSS13Q9BYE2 586 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 FAM60AQ9NP50 221 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 IGKV3-7A0A075B6H7 116 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 TMEM30CPA0ZSE6 113 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 RAF1P04049 648 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 HTN1P15515 57 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 ATF1P18846 271 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 PPP1CBP62140 327 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 HIST2H3AQ71DI3 136 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 PXT1Q8NFP0 134 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 JAM3Q9BX67 310 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 POMT1Q9Y6A1 747 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 CYTIPO60759 359 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 SNRPNP63162 240 aaKnown RBP13.96□□□□□ -0.17
PTPRF-201ENST00000359947 FBXO34Q9NWN3 711 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.96□□□□□ -0.18
PTPRF-201ENST00000359947 MN1Q10571 1320 aaPredicted RBP13.96□□□□□ -0.18
PTPRF-201ENST00000359947 LINC01387J3KSC0 135 aa13.96□□□□□ -0.18
PTPRF-201ENST00000359947 GPR31O00270 319 aa13.96□□□□□ -0.18
PTPRF-201ENST00000359947 ZBTB25P24278 435 aa13.96□□□□□ -0.18
PTPRF-201ENST00000359947 DRD3P35462 400 aa13.96□□□□□ -0.18
PTPRF-201ENST00000359947 PHYHD1Q5SRE7 291 aa13.96□□□□□ -0.18
PTPRF-201ENST00000359947 LRRC29Q8WV35 223 aa13.96□□□□□ -0.18
PTPRF-201ENST00000359947 POM121L2Q96KW2 1035 aa13.96□□□□□ -0.18
PTPRF-201ENST00000359947 ZNF32P17041 273 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 SLC35B4Q969S0 331 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 MMP25Q9NPA2 562 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 ZNF230Q9UIE0 474 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-201ENST00000359947 NUP214P35658 2090 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-201ENST00000359947 OPRK1P41145 380 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 CTU2Q2VPK5 515 aaKnown RBP13.95□□□□□ -0.18
PTPRF-201ENST00000359947 SLC7A6Q92536 515 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 ICAM5Q9UMF0 924 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 DEFA6Q01524 100 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 NKG7Q16617 165 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 UBE3DQ7Z6J8 389 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 OR13G1Q8NGZ3 307 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 OR2G2Q8NGZ5 317 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 MCHR2Q969V1 340 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 CLDN23Q96B33 292 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 TPBGQ13641 420 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 SMIM19Q96E16 107 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 FGF7P21781 194 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 GNG3P63215 75 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 SKA3Q8IX90 412 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 TXNDC12O95881 172 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 ZNF26P17031 533 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-201ENST00000359947 ADRA2CP18825 462 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 TGFBR1P36897 503 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 CASP3P42574 277 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 CLEC12BQ2HXU8 276 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 VMA21Q3ZAQ7 101 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 DDOQ99489 341 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 TMEM129A0AVI4 362 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 ADAM20O43506 726 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 NGFP01138 241 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 C19orf48Q6RUI8 117 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 ZNF705AQ6ZN79 300 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-201ENST00000359947 SSX7Q7RTT5 188 aa13.95□□□□□ -0.18
PTPRF-201ENST00000359947 NHSL1Q5SYE7 1610 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 TDRD6O60522 2096 aaKnown RBP13.94□□□□□ -0.18
PTPRF-201ENST00000359947 LY86O95711 162 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 FAM26EQ8N5C1 309 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 RHOBP62745 196 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 EXTL1Q92935 676 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 GPR87Q9BY21 358 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 FLVCR2Q9UPI3 526 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 TMEM200CA6NKL6 621 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 SYT6Q5T7P8 510 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-201ENST00000359947 OR13F1Q8NGS4 319 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 RPUSD4Q96CM3 377 aaKnown RBP13.94□□□□□ -0.18
PTPRF-201ENST00000359947 TCEAL7Q9BRU2 100 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 GAL3ST2Q9H3Q3 398 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 PSG11Q9UQ72 335 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 ZAR1LA6NP61 321 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 FCGR3BO75015 233 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 S100A11P31949 105 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 FABP5Q01469 135 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 RSRP1Q9BUV0 290 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 GOLT1BQ9Y3E0 138 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 STRCQ7RTU9 1775 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 CLEC18AA5D8T8 446 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 SULT1C4O75897 302 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 CD3DP04234 171 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 IL5P05113 134 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 CMPK2Q5EBM0 449 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 FAM27D1Q5T7N8 215 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 ACSM6Q6P461 480 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 TMUB2Q71RG4 321 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 CLEC18CQ8NCF0 446 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 SMRP1Q8NCR6 262 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 FAM103A1Q9BTL3 118 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms