RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 HSPD1P10809 573 aaKnown RBP14.9□□□□□ -0.02
SHMT1-205ENST00000395684 U2AF2P26368 475 aaKnown RBP eCLIP14.9□□□□□ -0.026e-9■■■■■ 33.4
SHMT1-205ENST00000395684 DHX40Q8IX18 779 aaKnown RBP14.9□□□□□ -0.02
SHMT1-205ENST00000395684 ERCC4Q92889 916 aaPredicted RBP14.9□□□□□ -0.02
SHMT1-205ENST00000395684 MRFAP1L1Q96HT8 127 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 FMNL2Q96PY5 1086 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 PALLDQ8WX93 1383 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 SCN11AQ9UI33 1791 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 MEGF6O75095 1541 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 CYP27B1O15528 508 aa14.89□□□□□ -0.03
SHMT1-205ENST00000395684 PDIA3P30101 505 aaKnown RBP14.89□□□□□ -0.03
SHMT1-205ENST00000395684 TPD52L1Q16890 204 aaPredicted RBP14.89□□□□□ -0.03
SHMT1-205ENST00000395684 ZMYM1Q5SVZ6 1142 aa14.89□□□□□ -0.03
SHMT1-205ENST00000395684 NAA30Q147X3 362 aaPredicted RBP14.89□□□□□ -0.03
SHMT1-205ENST00000395684 PLBD2Q8NHP8 589 aa14.89□□□□□ -0.03
SHMT1-205ENST00000395684 NAP1L2Q9ULW6 460 aaPredicted RBP14.89□□□□□ -0.03
SHMT1-205ENST00000395684 USP27XA6NNY8 438 aa14.89□□□□□ -0.03
SHMT1-205ENST00000395684 FAM160A1Q05DH4 1040 aa14.89□□□□□ -0.03
SHMT1-205ENST00000395684 CCDC73Q6ZRK6 1079 aa14.89□□□□□ -0.03
SHMT1-205ENST00000395684 H7C1W4 665 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 KINO60870 393 aaKnown RBP14.88□□□□□ -0.03
SHMT1-205ENST00000395684 FDPSP14324 419 aaKnown RBP14.88□□□□□ -0.03
SHMT1-205ENST00000395684 ME1P48163 572 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 DMTNQ08495 405 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 DCAF5Q96JK2 942 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 ZNF396Q96N95 335 aaPredicted RBP14.88□□□□□ -0.03
SHMT1-205ENST00000395684 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.88□□□□□ -0.03
SHMT1-205ENST00000395684 PAXBP1Q9Y5B6 917 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 BECN2A8MW95 431 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 RBM6P78332 1123 aaKnown RBP14.88□□□□□ -0.03
SHMT1-205ENST00000395684 TTLL5Q6EMB2 1281 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 FSIP1Q8NA03 581 aa14.88□□□□□ -0.03
SHMT1-205ENST00000395684 LAMA4Q16363 1823 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 MAST3O60307 1309 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 TRPM3Q9HCF6 1732 aaPredicted RBP14.87□□□□□ -0.03
SHMT1-205ENST00000395684 ATL3Q6DD88 541 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 ZNF274Q96GC6 653 aaPredicted RBP14.87□□□□□ -0.03
SHMT1-205ENST00000395684 PCDHA7Q9UN72 937 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 AFDNP55196 1824 aaKnown RBP14.87□□□□□ -0.03
SHMT1-205ENST00000395684 NBPF26B4DH59 902 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 LRRC24Q50LG9 513 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 NBPF14Q5TI25 921 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 NBPF10Q6P3W6 841 aaKnown RBP14.87□□□□□ -0.03
SHMT1-205ENST00000395684 FILIP1Q7Z7B0 1213 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 NBPF15Q8N660 670 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 GPHNQ9NQX3 736 aaPredicted RBP14.87□□□□□ -0.03
SHMT1-205ENST00000395684 ANO10Q9NW15 660 aa14.87□□□□□ -0.03
SHMT1-205ENST00000395684 CARMIL3Q8ND23 1372 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 SKILP12757 684 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 SYCP1Q15431 976 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 CEP135Q66GS9 1140 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 CCDC112Q8NEF3 446 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 FBXW7Q969H0 707 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 ZNF594Q96JF6 807 aaPredicted RBP14.86□□□□□ -0.03
SHMT1-205ENST00000395684 M0R2C6 588 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 UTP14CQ5TAP6 766 aaKnown RBP14.86□□□□□ -0.03
SHMT1-205ENST00000395684 FMR1NBQ8N0W7 255 aaPredicted RBP14.86□□□□□ -0.03
SHMT1-205ENST00000395684 ZNF592Q92610 1267 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 GPR108Q9NPR9 543 aa14.86□□□□□ -0.03
SHMT1-205ENST00000395684 ARFGEF2Q9Y6D5 1785 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 CCDC69A6NI79 296 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 RNF113AO15541 343 aaKnown RBP14.85□□□□□ -0.03
SHMT1-205ENST00000395684 CCZ1BP86790 482 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 CCZ1P86791 482 aaPredicted RBP14.85□□□□□ -0.03
SHMT1-205ENST00000395684 OTUD7BQ6GQQ9 843 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 TTLL7Q6ZT98 887 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 AOPEPQ8N6M6 819 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 A0A1B0GVL5 298 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 NEMFO60524 1076 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 IFIT1P09914 478 aaKnown RBP14.85□□□□□ -0.03
SHMT1-205ENST00000395684 CSB-PGBD3P0DP91 1061 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 IL15P40933 162 aaPredicted RBP14.85□□□□□ -0.03
SHMT1-205ENST00000395684 CABP4P57796 275 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 OSBP2Q969R2 916 aa14.85□□□□□ -0.03
SHMT1-205ENST00000395684 MYH15Q9Y2K3 1946 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 NYAP1Q6ZVC0 841 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 DDX17Q92841 729 aaKnown RBP14.84□□□□□ -0.03
SHMT1-205ENST00000395684 BCL11BQ9C0K0 894 aaPredicted RBP14.84□□□□□ -0.03
SHMT1-205ENST00000395684 RTEL1Q9NZ71 1219 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 A0A1B0GUL7 405 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 NDUFA8P51970 172 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 EVCP57679 992 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 ADALQ6DHV7 355 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 CEP57L1Q8IYX8 460 aa14.84□□□□□ -0.03
SHMT1-205ENST00000395684 MRPS27Q92552 414 aaKnown RBP14.84□□□□□ -0.03
SHMT1-205ENST00000395684 PUS3Q9BZE2 481 aaKnown RBP14.84□□□□□ -0.03
SHMT1-205ENST00000395684 ZHX1Q9UKY1 873 aaPredicted RBP14.84□□□□□ -0.03
SHMT1-205ENST00000395684 EYA2O00167 538 aa14.83□□□□□ -0.03
SHMT1-205ENST00000395684 FOXP2O15409 715 aa14.83□□□□□ -0.03
SHMT1-205ENST00000395684 NBPF11Q86T75 865 aa14.83□□□□□ -0.03
SHMT1-205ENST00000395684 LINC00301Q8NCQ3 95 aa14.83□□□□□ -0.03
SHMT1-205ENST00000395684 SDF4Q9BRK5 362 aa14.83□□□□□ -0.03
SHMT1-205ENST00000395684 CWC25Q9NXE8 425 aaPredicted RBP14.83□□□□□ -0.03
SHMT1-205ENST00000395684 CLIC4Q9Y696 253 aa14.83□□□□□ -0.03
SHMT1-205ENST00000395684 C1orf167Q5SNV9 1468 aa14.83□□□□□ -0.04
SHMT1-205ENST00000395684 CHRNA2Q15822 529 aa14.83□□□□□ -0.04
SHMT1-205ENST00000395684 TICAM2Q86XR7 235 aa14.83□□□□□ -0.04
SHMT1-205ENST00000395684 FBXL16Q8N461 479 aa14.83□□□□□ -0.04
SHMT1-205ENST00000395684 CABLES1Q8TDN4 633 aa14.83□□□□□ -0.04
SHMT1-205ENST00000395684 TRMT1Q9NXH9 659 aaKnown RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms