RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 PRDM10Q9NQV6 1147 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 CNPY2Q9Y2B0 182 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 GOLGA8AA7E2F4 631 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 TTF1Q15361 905 aaPredicted RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 SKIDA1Q1XH10 827 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 TSHZ3Q63HK5 1081 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 PLEKHF1Q96S99 279 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 ZHX3Q9H4I2 956 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 RBM8AQ9Y5S9 174 aaKnown RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 IFIT3O14879 490 aaKnown RBP9.67□□□□□ -0.86
VPS36-201ENST00000378060 ZFYP08048 801 aaPredicted RBP9.67□□□□□ -0.86
VPS36-201ENST00000378060 FBXO41Q8TF61 875 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 TNNQ9UQP3 1299 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 COL14A1Q05707 1796 aaKnown RBP9.67□□□□□ -0.86
VPS36-201ENST00000378060 SKILP12757 684 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 FAM193AP78312 1265 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 NCOA7Q8NI08 942 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 SRRTQ9BXP5 876 aaKnown RBP9.67□□□□□ -0.86
VPS36-201ENST00000378060 DACT1Q9NYF0 836 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 ABCF2Q9UG63 623 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 IGSF1Q8N6C5 1336 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 BRF1Q92994 677 aa9.67□□□□□ -0.86
VPS36-201ENST00000378060 BLMP54132 1417 aaPredicted RBP9.67□□□□□ -0.86
VPS36-201ENST00000378060 ZBTB7BO15156 539 aaPredicted RBP9.66□□□□□ -0.86
VPS36-201ENST00000378060 SSBP05455 408 aaKnown RBP eCLIP9.66□□□□□ -0.86
VPS36-201ENST00000378060 ANO6Q4KMQ2 910 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 RAB34Q9BZG1 259 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 CENPHQ9H3R5 247 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 FAM208AQ9UK61 1670 aaKnown RBP9.66□□□□□ -0.86
VPS36-201ENST00000378060 MEGF6O75095 1541 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 GOLIM4O00461 696 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 MRPS27Q92552 414 aaKnown RBP9.66□□□□□ -0.86
VPS36-201ENST00000378060 BIN1O00499 593 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 KIF20AO95235 890 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 C16orf71Q8IYS4 520 aaPredicted RBP9.66□□□□□ -0.86
VPS36-201ENST00000378060 SPINK5Q9NQ38 1064 aaPredicted RBP9.66□□□□□ -0.86
VPS36-201ENST00000378060 NRAPQ86VF7 1730 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 DLG5Q8TDM6 1919 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 BMP15O95972 392 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 TERF1P54274 439 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 SAMD1Q6SPF0 538 aaPredicted RBP9.66□□□□□ -0.86
VPS36-201ENST00000378060 NECAB1Q8N987 351 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 CCDC85AQ96PX6 553 aaPredicted RBP9.66□□□□□ -0.86
VPS36-201ENST00000378060 ZMYND15Q9H091 742 aa9.66□□□□□ -0.86
VPS36-201ENST00000378060 MINDY4BA8MYZ0 360 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 PTCD1O75127 700 aaKnown RBP9.65□□□□□ -0.86
VPS36-201ENST00000378060 SLC5A1P13866 664 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 SYKP43405 635 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 GNG11P61952 73 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 TUBB4BP68371 445 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 DNM1Q05193 864 aaKnown RBP9.65□□□□□ -0.86
VPS36-201ENST00000378060 VPS36Q86VN1 386 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 NUP88Q99567 741 aaPredicted RBP9.65□□□□□ -0.86
VPS36-201ENST00000378060 TTC12Q9H892 705 aaPredicted RBP9.65□□□□□ -0.86
VPS36-201ENST00000378060 WDR17Q8IZU2 1322 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 PPP1R12BO60237 982 aaPredicted RBP9.65□□□□□ -0.86
VPS36-201ENST00000378060 TYRO3Q06418 890 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 CAVIN4Q5BKX8 364 aa9.65□□□□□ -0.86
VPS36-201ENST00000378060 ANKRD18BA2A2Z9 1011 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 POLR3GO15318 223 aaPredicted RBP9.65□□□□□ -0.87
VPS36-201ENST00000378060 CHMLP26374 656 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 ZNF445P59923 1031 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 ATL3Q6DD88 541 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 UBE3BQ7Z3V4 1068 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 TSG101Q99816 390 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 TEX13AQ9BXU3 409 aaPredicted RBP9.65□□□□□ -0.87
VPS36-201ENST00000378060 BCL9LQ86UU0 1499 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 AFF2P51816 1311 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 RAD50Q92878 1312 aa9.65□□□□□ -0.87
VPS36-201ENST00000378060 NEFHP12036 1026 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 METAP2P50579 478 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS36-201ENST00000378060 UBASH3AP57075 661 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 ATP2B2Q01814 1243 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 SPAG1Q07617 926 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 MTHFSDQ2M296 383 aaKnown RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 CACNA2D4Q7Z3S7 1137 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 CATIPQ7Z7H3 387 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 EHBP1Q8NDI1 1231 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 CWC25Q9NXE8 425 aaPredicted RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 SLU7O95391 586 aaKnown RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 POLR3DP05423 398 aaPredicted RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 MCMDC2Q4G0Z9 681 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 KSR2Q6VAB6 950 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 ANKRD13DQ6ZTN6 518 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 ILDR1Q86SU0 546 aaPredicted RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 IFNL2Q8IZJ0 200 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 ZGPATQ8N5A5 531 aaKnown RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 ZNF830Q96NB3 372 aaPredicted RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 ZNF652Q9Y2D9 606 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 SPATA31A6Q5VVP1 1343 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 CCDC194A0A1B0GVG4 234 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 GRM8O00222 908 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 SNRPA1P09661 255 aaKnown RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 TMEM67Q5HYA8 995 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 TSPYL6Q8N831 410 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 LINS1Q8NG48 757 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 SMARCC1Q92922 1105 aaPredicted RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 NAA15Q9BXJ9 866 aaKnown RBP9.64□□□□□ -0.87
VPS36-201ENST00000378060 ARFGAP3Q9NP61 516 aa9.64□□□□□ -0.87
VPS36-201ENST00000378060 KIF24Q5T7B8 1368 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms