RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 OR6C1Q96RD1 312 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 URM1Q9BTM9 101 aaKnown RBP16.55■□□□□ 0.24
CPSF3-201ENST00000238112 ANAPC10Q9UM13 185 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 ABCA7Q8IZY2 2146 aa16.55■□□□□ 0.24
CPSF3-201ENST00000238112 BCAT2O15382 392 aaPredicted RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 OR2J2O76002 312 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 ZFAND5O76080 213 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 TIAF1O95411 115 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 TPT1P13693 172 aaKnown RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF43P17038 809 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 NAT1P18440 290 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 PTGDSP41222 190 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 FAM57BQ71RH2 274 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 DOK3Q7L591 496 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 OR1S2Q8NGQ3 325 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 C1orf147Q96MC9 270 aaPredicted RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 WDR77Q9BQA1 342 aaPredicted RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF319Q9P2F9 582 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 MYOTQ9UBF9 498 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 MYO15AQ9UKN7 3530 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 IGLV3-32A0A0A0MS00 114 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF726A6NNF4 738 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 DNASE2O00115 360 aaPredicted RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 SCRG1O75711 98 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 PLATP00750 562 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 QDPRP09417 244 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 DCDP81605 110 aaKnown RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 ARFRP1Q13795 201 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 PNLIPRP3Q17RR3 467 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 TMEM71Q6P5X7 295 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 CPEB2Q7Z5Q1 589 aaKnown RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 GTPBP8Q8N3Z3 284 aaPredicted RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 OR5H2Q8NGV7 314 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 STOML3Q8TAV4 291 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 OXGR1Q96P68 337 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 CDC6Q99741 560 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 NKX6-2Q9C056 277 aaPredicted RBP16.54■□□□□ 0.24
CPSF3-201ENST00000238112 FAM117AQ9C073 453 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 C5orf66Q9H5L9 145 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 GPR132Q9UNW8 380 aa16.54■□□□□ 0.24
CPSF3-201ENST00000238112 TEX13DA0A0J9YY54 714 aaPredicted RBP16.53■□□□□ 0.24
CPSF3-201ENST00000238112 A0A1W2PP11 408 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 TOX3O15405 576 aaPredicted RBP16.53■□□□□ 0.24
CPSF3-201ENST00000238112 SFTPDP35247 375 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 ARHGDIBP52566 201 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 SLC22A8Q8TCC7 542 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 ARHGAP5-AS1Q96IT6 56 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 SCGB3A2Q96PL1 93 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 RAB19A4D1S5 217 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF814B7Z6K7 855 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 AMY2BP19961 511 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 CCL1P22362 96 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 CBX5P45973 191 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 TMEM50BP56557 158 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 GRB2P62993 217 aaKnown RBP16.53■□□□□ 0.24
CPSF3-201ENST00000238112 SLC9A3R2Q15599 337 aa16.53■□□□□ 0.24
CPSF3-201ENST00000238112 PNLDC1Q8NA58 520 aaKnown RBP16.53■□□□□ 0.24
CPSF3-201ENST00000238112 PNRC2Q9NPJ4 139 aaKnown RBP16.53■□□□□ 0.24
CPSF3-201ENST00000238112 MRPS17Q9Y2R5 130 aaKnown RBP16.53■□□□□ 0.24
CPSF3-201ENST00000238112 PHF3Q92576 2039 aaKnown RBP16.53■□□□□ 0.24
CPSF3-201ENST00000238112 TRBV6-7A0A0A0MS04 114 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 RAD51DO75771 328 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 SFT2D2O95562 160 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 ZNF17P17021 662 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 OR2M3Q8NG83 312 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 OCSTAMPQ9BR26 566 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 PHF7Q9BWX1 381 aaPredicted RBP16.52■□□□□ 0.24
CPSF3-201ENST00000238112 OR10A2Q9H208 303 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 SLC39A1Q9NY26 324 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 FLVCR1Q9Y5Y0 555 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 SPEGQ15772 3267 aa16.52■□□□□ 0.24
CPSF3-201ENST00000238112 MPTX1A8MV57 137 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 F8VVB4 439 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 F8VWA3 439 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 IGFBP4P22692 258 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 FPR2P25090 351 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 AIMP2Q13155 320 aaKnown RBP16.52■□□□□ 0.23
CPSF3-201ENST00000238112 ZNF169Q14929 603 aaPredicted RBP16.52■□□□□ 0.23
CPSF3-201ENST00000238112 TMEM176BQ3YBM2 270 aaPredicted RBP16.52■□□□□ 0.23
CPSF3-201ENST00000238112 CCDC157Q569K6 752 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 CLEC18BQ6UXF7 455 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 ZNF574Q6ZN55 896 aaPredicted RBP16.52■□□□□ 0.23
CPSF3-201ENST00000238112 TMEM230Q96A57 120 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 CRB3Q9BUF7 120 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 RAB18Q9NP72 206 aa16.52■□□□□ 0.23
CPSF3-201ENST00000238112 A0A0B4J2A0 478 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 CEACAM18A8MTB9 384 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 MFNGO00587 321 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 MBTPS2O43462 519 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 TLX3O43711 291 aaPredicted RBP16.51■□□□□ 0.23
CPSF3-201ENST00000238112 ANOS1P23352 680 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 OR3A2P47893 321 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 KCNMB1Q16558 191 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 SGCAQ16586 387 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 TMPPEQ6ZT21 453 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 BAP18Q8IXM2 172 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 CLRN3Q8NCR9 226 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 OR51T1Q8NGJ9 327 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 PAQR8Q8TEZ7 354 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 SLC25A43Q8WUT9 341 aaPredicted RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms