RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SLC22A4Q9H015 551 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 FN3KQ9H479 309 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 REEP1Q9H902 201 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 DDX28Q9NUL7 540 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 OPN4Q9UHM6 478 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 LRCH1Q9Y2L9 728 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 FAM107AO95990 144 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 ADRA2CP18825 462 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 GATA4P43694 442 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 BLVRAP53004 296 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 ZNF362Q5T0B9 420 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 OR2T5Q6IEZ7 315 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 PGAP1Q75T13 922 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 ZNF771Q7L3S4 317 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 BPIFB2Q8N4F0 458 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 AQP11Q8NBQ7 271 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 OR10AD1Q8NGE0 317 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 OR2T29Q8NH02 315 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 FAM216AQ8WUB2 273 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 MAP6Q96JE9 813 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 RBM4Q9BWF3 364 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 TBC1D23Q9NUY8 699 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 MIOXQ9UGB7 285 aa16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 PRPF19Q9UMS4 504 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-203ENST00000617445 M0R135 149 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 HAX1O00165 279 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 MLNRO43193 412 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 FSHBP01225 129 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 ZNF12P17014 697 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 HOXB6P17509 224 aaKnown RBP16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 FMO3P31513 532 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 OTX1P32242 354 aaPredicted RBP16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 PYCR1P32322 319 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 SLC25A1P53007 311 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 TEX30Q5JUR7 227 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 DRAM2Q6UX65 266 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 CYB561A3Q8NBI2 242 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 SLC37A3Q8NCC5 494 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 CCDC197Q8NCU1 140 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 BHLHE23Q8NDY6 225 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 OR2T33Q8NG76 320 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 SPRYD4Q8WW59 207 aaPredicted RBP16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 SLCO4A1Q96BD0 722 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 ZNF799Q96GE5 643 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 TSSK6Q9BXA6 273 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 PLA2G12AQ9BZM1 189 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 C1orf21Q9H246 121 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 WDR76Q9H967 626 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 NTN4Q9HB63 628 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 SAMHD1Q9Y3Z3 626 aaKnown RBP16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 NBEAL1Q6ZS30 2694 aa16.02■□□□□ 0.16
CCDC28A-203ENST00000617445 CEACAM18A8MTB9 384 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 F5H5P2 479 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 H0YL77 283 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 IFNGP01579 166 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 WNT2P09544 360 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 IRF2P14316 349 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF154Q13106 437 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 PCK2Q16822 640 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 CD300LDQ6UXZ3 194 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 C12orf54Q6X4T0 127 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 MRPL21Q7Z2W9 205 aaKnown RBP16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 NAA40Q86UY6 237 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 DEFB108BQ8NET1 73 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 OR8D4Q8NGM9 314 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 Q8TCH9 128 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 ASB9Q96DX5 294 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 PLEKHA8Q96JA3 519 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 LRGUKQ96M69 825 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 MRI1Q9BV20 369 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 TMEM165Q9HC07 324 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 FAM53CQ9NYF3 392 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 OR5V1Q9UGF6 321 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 INSIG2Q9Y5U4 225 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 AUP1Q9Y679 476 aa16.01■□□□□ 0.15
CCDC28A-203ENST00000617445 TRAPPC2LH3BP13 241 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 RAP2AP10114 183 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 CD200P41217 278 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 ENTPD1P49961 510 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 RAD23AP54725 363 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 MS4A2Q01362 244 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 DBPQ10586 325 aaPredicted RBP16■□□□□ 0.15
CCDC28A-203ENST00000617445 MOGAT3Q86VF5 341 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 PLPP7Q8NBV4 271 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 OR10S1Q8NGN2 331 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 OR11L1Q8NGX0 322 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF420Q8TAQ5 688 aaPredicted RBP16■□□□□ 0.15
CCDC28A-203ENST00000617445 SSBP3Q9BWW4 388 aaPredicted RBP16■□□□□ 0.15
CCDC28A-203ENST00000617445 NMNAT2Q9BZQ4 307 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 OPA3Q9H6K4 179 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 MMP26Q9NRE1 261 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 COMMD3-BMI1R4GMX3 469 aa16■□□□□ 0.15
CCDC28A-203ENST00000617445 ANK2Q01484 3957 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 TVP23AA6NH52 213 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 RIIAD1A6NNX1 92 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 CD300LBA8K4G0 201 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 GMDSO60547 372 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 CYB5R3P00387 301 aaPredicted RBP15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 HLA-DPB1P04440 258 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms