RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TTC28Q96AY4 2481 aa14.42□□□□□ -0.1
COL4A1-204ENST00000543140 LOC390937A0A1W2PQ73 354 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 CDX4O14627 284 aaPredicted RBP14.41□□□□□ -0.1
COL4A1-204ENST00000543140 LDLRAD4O15165 306 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 ICMTO60725 284 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 NDUFB6O95139 128 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 CSF1P09603 554 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 SULT1A3P0DMM9 295 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 SULT1A4P0DMN0 295 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 ZNF17P17021 662 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 ZP1P60852 638 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 WIPI1Q5MNZ9 446 aaPredicted RBP14.41□□□□□ -0.1
COL4A1-204ENST00000543140 FGD2Q7Z6J4 655 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 ZIC4Q8N9L1 334 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 THOC3Q96J01 351 aaKnown RBP14.41□□□□□ -0.1
COL4A1-204ENST00000543140 HYLS1Q96M11 299 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 ZPBPQ9BS86 351 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 ZFP64Q9NPA5 681 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 OR5H15A6NDH6 313 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 E9PLN8 166 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 PYCARD-AS1I3L0S3 204 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 SMAD9O15198 467 aaKnown RBP14.41□□□□□ -0.1
COL4A1-204ENST00000543140 VAMP5O95183 116 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 SERPINA7P05543 415 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 GABRA1P14867 456 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 RAB3AP20336 220 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 MSR1P21757 451 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 PMPCAQ10713 525 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 SPINK14Q6IE38 97 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 MYO7BQ6PIF6 2116 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 NAXDQ8IW45 347 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 TMEM123Q8N131 208 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 OR51S1Q8NGJ8 323 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 CMBLQ96DG6 245 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 SEH1LQ96EE3 360 aa14.41□□□□□ -0.1
COL4A1-204ENST00000543140 PINLYPA6NC86 204 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 LRRC3CA6NJW4 275 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 F5H5K5 113 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 SRD5A2P31213 254 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 FAUP35544 74 aaKnown RBP14.4□□□□□ -0.1
COL4A1-204ENST00000543140 CYB561P49447 251 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 ZNF528Q3MIS6 628 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 PIAS4Q8N2W9 510 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-204ENST00000543140 OR11H4Q8NGC9 324 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 GRPEL2Q8TAA5 225 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 GPX8Q8TED1 209 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 PSMF1Q92530 271 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 TMEM54Q969K7 222 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 FOXRED1Q96CU9 486 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-204ENST00000543140 GINS4Q9BRT9 223 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 SPRY4Q9C004 299 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 NELFAQ9H3P2 528 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 SLA2Q9H6Q3 261 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 TAS2R8Q9NYW2 309 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 ZNF69Q9UC07 566 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 MGAT4AQ9UM21 535 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 A0A1B0GUH1 482 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 TMEM235A6NFC5 223 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 TGM6O95932 706 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 DLSTP36957 453 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 SLC6A9P48067 706 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 CARD18P57730 90 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 ENDOGQ14249 297 aaKnown RBP14.4□□□□□ -0.1
COL4A1-204ENST00000543140 RSPO4Q2I0M5 234 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-204ENST00000543140 PLA2G2CQ5R387 149 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 METTL11BQ5VVY1 283 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 H3F3CQ6NXT2 135 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 RHOUQ7L0Q8 258 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 OR52B4Q8NGK2 314 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 ROBO4Q8WZ75 1007 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 SFXN2Q96NB2 322 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 DDA1Q9BW61 102 aa14.4□□□□□ -0.1
COL4A1-204ENST00000543140 MEIKINA0A087WXM9 373 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 GJE1A6NN92 205 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 DHHO43323 396 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 TSC22D2O75157 780 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 RLN1P04808 185 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 AKAIN1P0CW23 69 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 NTF4P34130 210 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 RFC3P40938 356 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 SUCLG1P53597 346 aaKnown RBP14.39□□□□□ -0.11
COL4A1-204ENST00000543140 UNC119Q13432 240 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 GLDNQ6ZMI3 551 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-204ENST00000543140 SLC22A24Q8N4F4 322 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 PAQR4Q8N4S7 273 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-204ENST00000543140 CLEC1AQ8NC01 280 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF431Q8TF32 576 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-204ENST00000543140 ULBP2Q9BZM5 246 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 CHIAQ9BZP6 476 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 METTL17Q9H7H0 456 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-204ENST00000543140 MOB1AQ9H8S9 216 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 MED13Q9UHV7 2174 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 PRAF2O60831 178 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 TOXO94900 526 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 NR2C1P13056 603 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 GDF1P27539 372 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF93P35789 620 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-204ENST00000543140 LSM6P62312 80 aaKnown RBP14.39□□□□□ -0.11
COL4A1-204ENST00000543140 POU4F3Q15319 338 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 NDUFA5Q16718 116 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms