RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 IGLV3-27P01718 113 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 DCAF12Q5T6F0 453 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 PLXDC2Q6UX71 529 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 ADPRHL1Q8NDY3 354 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 OR2G2Q8NGZ5 317 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CALHM2Q9HA72 323 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 NGBQ9NPG2 151 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 B4E171 279 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 M0R1X1 148 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 MGMTP16455 207 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CD1CP29017 333 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CSF2RBP32927 897 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 PKIAP61925 76 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 SSBP1Q04837 148 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CYHR1Q6ZMK1 362 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM182Q6ZP80 229 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 BAP18Q8IXM2 172 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC35G3Q8N808 338 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC38A9Q8NBW4 561 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 VN1R2Q8NFZ6 395 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC37A2Q8TED4 501 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 OR1A1Q9P1Q5 309 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 ING1Q9UK53 422 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 AKR7A3O95154 331 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 OR8U8P0C7N1 319 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 FCGR2CP31995 323 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF154Q13106 437 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 ACKR1Q16570 336 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 SLAMF6Q96DU3 332 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 TVP23CQ96ET8 276 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 TRBV5-4A0A0C4DH59 114 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 HSD17B6O14756 317 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF85Q03923 595 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 CTF1Q16619 201 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 WDR73Q6P4I2 378 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 OR10J5Q8NHC4 309 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 RNF150Q9ULK6 438 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 A0A087WV62 115 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 GSTP1P09211 210 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 PYCR3Q53H96 274 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 Q6ZRG5 221 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 CCDC190Q86UF4 302 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 UCN3Q969E3 161 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 NRSN2Q9GZP1 204 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 LAT2Q9GZY6 243 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 GSX1Q9H4S2 264 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 UCK1Q9HA47 277 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 FAM166BA8MTA8 275 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 K7ESM1 405 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 TPOP07202 933 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 ABOP16442 354 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 CSNK1EP49674 416 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 LPAL2Q16609 132 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 OR8G2PQ6IF36 304 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 UQCC3Q6UW78 93 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 C11orf42Q8N5U0 333 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 SMIM4Q8WVI0 70 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF2Q9BSG1 426 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 MIOXQ9UGB7 285 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF346Q9UL40 294 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 SSUH2Q9Y2M2 353 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 FLVCR1Q9Y5Y0 555 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 NUMBLQ9Y6R0 609 aa9.33□□□□□ -0.92
LIMCH1-203ENST00000396595 E5RGE8 158 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 DEGS1O15121 323 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 FGF17O60258 216 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 OR4E1P0C645 316 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 PMCHP20382 165 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 EXT1Q16394 746 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 OR13H1Q8NG92 308 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 FLVCR2Q9UPI3 526 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 TRAPPC4Q9Y296 219 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 NSG2Q9Y328 171 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 TRAV1-2A0A0B4J238 106 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 G3V3Y1 287 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 FCMRO60667 390 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 BSGP35613 385 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 STAC2Q6ZMT1 411 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 BCORP1Q8N888 145 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 OR2AE1Q8NHA4 323 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 OR51E1Q8TCB6 317 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 OR5V1Q9UGF6 321 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 ELOA3CA0A087WX78 387 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 RPL12P30050 165 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 PPICP45877 212 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 ELLP55199 621 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 PRTGQ2VWP7 1150 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 DHRS13Q6UX07 377 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF383Q8NA42 475 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 OR51H1Q8NH63 302 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 SCMH1Q96GD3 660 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 PTDSS2Q9BVG9 487 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 PARP12Q9H0J9 701 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 MBNL1Q9NR56 388 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 LAMP3Q9UQV4 416 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 RNF24Q9Y225 148 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 AKR7A2O43488 359 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 RPL18Q07020 188 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF77Q15935 545 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms