RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 HINT3Q9NQE9 182 aaKnown RBP14.1□□□□□ -0.15
PTPRF-201ENST00000359947 SLC22A13Q9Y226 551 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 IAPPP10997 89 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 AGERQ15109 404 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 SLC7A5P1Q8MH63 180 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 ZNF436Q9C0F3 470 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-201ENST00000359947 NDUFB3O43676 98 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 EXOSC2Q13868 293 aaKnown RBP14.1□□□□□ -0.15
PTPRF-201ENST00000359947 FZD2Q14332 565 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 ACSM5Q6NUN0 579 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 OCEL1Q9H607 264 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 COLQQ9Y215 455 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-201ENST00000359947 SULT1C2O00338 296 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 SLC31A2O15432 143 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 SSSCA1O60232 199 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 UBE2G1P62253 170 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 DBX2Q6ZNG2 339 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 VN1R1Q9GZP7 353 aa14.1□□□□□ -0.15
PTPRF-201ENST00000359947 TXNL1O43396 289 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 GOSR1O95249 250 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 ERHP84090 104 aaKnown RBP14.09□□□□□ -0.15
PTPRF-201ENST00000359947 OPCMLQ14982 345 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 PDCD1Q15116 288 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 GSG1Q2KHT4 349 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 OR10V1Q8NGI7 309 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 GDF2Q9UK05 429 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-201ENST00000359947 SCN3AQ9NY46 2000 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 XRCC2O43543 280 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 PLAC9Q5JTB6 97 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 OR2L13Q8N349 312 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 OR2M2Q96R28 347 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 PATZ1Q9HBE1 687 aaKnown RBP14.09□□□□□ -0.15
PTPRF-201ENST00000359947 SCGB1D1O95968 90 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 CCL2P13500 99 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 PCBP3P57721 371 aaKnown RBP14.09□□□□□ -0.15
PTPRF-201ENST00000359947 RHOUQ7L0Q8 258 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 C20orf85Q9H1P6 137 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 LILRA5A6NI73 299 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 IL11RAQ14626 422 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 ADIRFQ15847 76 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 NRARPQ7Z6K4 114 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 LGI3Q8N145 548 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 SEC22CQ9BRL7 303 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 SPNS1Q9H2V7 528 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 ACER3Q9NUN7 267 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 DOCK2Q92608 1830 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 DIO1P49895 249 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 SSC5DA1L4H1 1573 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 ATXN7O15265 892 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-201ENST00000359947 XRCC3O43542 346 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 SLC6A12P48065 614 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 SOX8P57073 446 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 S1PR5Q9H228 398 aa14.09□□□□□ -0.15
PTPRF-201ENST00000359947 A0A087WZY1 265 aa14.08□□□□□ -0.15
PTPRF-201ENST00000359947 ZNF767PQ75MW2 155 aa14.08□□□□□ -0.15
PTPRF-201ENST00000359947 OR52H1Q8NGJ2 320 aa14.08□□□□□ -0.15
PTPRF-201ENST00000359947 SLA2Q9H6Q3 261 aa14.08□□□□□ -0.15
PTPRF-201ENST00000359947 FLVCR1Q9Y5Y0 555 aa14.08□□□□□ -0.15
PTPRF-201ENST00000359947 HPNP05981 417 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 PI3P19957 117 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 DHRS4L2Q6PKH6 230 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 SFT2D1Q8WV19 159 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 KCTD12Q96CX2 325 aaKnown RBP14.08□□□□□ -0.16
PTPRF-201ENST00000359947 TSTD3H0UI37 97 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 BAMBIQ13145 260 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 PRDX4Q13162 271 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 PCK2Q16822 640 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 ELFN2Q5R3F8 820 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 SPINK2P20155 84 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 TCTN1Q2MV58 587 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 MOB3AQ96BX8 217 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 TNFSF14O43557 240 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 PSMB3P49720 205 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 ACER2Q5QJU3 275 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 STUMQ69YW2 141 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 LACC1Q8IV20 430 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 SLC30A7Q8NEW0 376 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 TVP23CQ96ET8 276 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 TXNIPQ9H3M7 391 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 SPACA1Q9HBV2 294 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 B3GALT5Q9Y2C3 310 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 PAPPA2Q9BXP8 1791 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 PATE3B3GLJ2 98 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 EIF3IQ13347 325 aaKnown RBP14.08□□□□□ -0.16
PTPRF-201ENST00000359947 SSPNQ14714 243 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 HFEQ30201 348 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 SMIM21Q3B7S5 101 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 DLEU7Q6UYE1 221 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 TP53I13Q8NBR0 393 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-201ENST00000359947 GPR78Q96P69 363 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 ST3GAL6Q9Y274 331 aa14.08□□□□□ -0.16
PTPRF-201ENST00000359947 UBL3O95164 117 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 EMC4Q5J8M3 183 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 ANKRD53Q8N9V6 530 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 DRAXINQ8NBI3 349 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-201ENST00000359947 TRGV10A0A0A0MS01 117 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 FAHP16930 419 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 DUSP1P28562 367 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 PAQR6Q6TCH4 344 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 C15orf54Q8N8G6 183 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms