RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RGS6P49758 472 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 DVL1P1P54792 670 aaPredicted RBP15.56■□□□□ 0.08
CLN3-202ENST00000355477 ZMAT1Q5H9K5 638 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 OR2T2Q6IF00 324 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 FBXW12Q6X9E4 464 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 COLCA1Q6ZS62 124 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 AQP12AQ8IXF9 295 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 OR5AS1Q8N127 324 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 PROKR2Q8NFJ6 384 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 OR2Z1Q8NG97 314 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 OR10G2Q8NGC3 310 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 OR10S1Q8NGN2 331 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 OR2T4Q8NH00 348 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 GIPC3Q8TF64 312 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 FEVQ99581 238 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 WDR76Q9H967 626 aa15.56■□□□□ 0.08
CLN3-202ENST00000355477 DHRS12A0PJE2 317 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 F5H5K5 113 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 GYPBP06028 91 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 CLUP10909 449 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 ZNF823P16415 610 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 HNF1AP20823 631 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 CRMP1Q14194 572 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 CD300LDQ6UXZ3 194 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 CXXC5Q7LFL8 322 aaKnown RBP15.55■□□□□ 0.08
CLN3-202ENST00000355477 OR2T33Q8NG76 320 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 OR5L1Q8NGL2 311 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 RAB1CQ92928 201 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 ATF6BQ99941 703 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 C1QTNF5Q9BXJ0 243 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 NMNAT2Q9BZQ4 307 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 ZNF665Q9H7R5 613 aa15.55■□□□□ 0.08
CLN3-202ENST00000355477 DEAF1O75398 565 aaPredicted RBP15.54■□□□□ 0.08
CLN3-202ENST00000355477 MSMBP08118 114 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 PRSS12P56730 875 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 ECH1Q13011 328 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 DNAL1Q4LDG9 190 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 IQCF1Q8N6M8 205 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 ZNF511Q8NB15 262 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 ITLN1Q8WWA0 313 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 TMEM186Q96B77 213 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 TIMD4Q96H15 378 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 HIF1ANQ9NWT6 349 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 KCNG2Q9UJ96 466 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 BAIAP2Q9UQB8 552 aa15.54■□□□□ 0.08
CLN3-202ENST00000355477 DOCK11Q5JSL3 2073 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 PHF1O43189 567 aaPredicted RBP15.53■□□□□ 0.08
CLN3-202ENST00000355477 IGHV2-5P01817 119 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 SPI1P17947 270 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 ANOS1P23352 680 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 TNFSF4P23510 183 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 SLC25A1P53007 311 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 FLOT2Q14254 428 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 GK3PQ14409 553 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 ZNF771Q7L3S4 317 aaPredicted RBP15.53■□□□□ 0.08
CLN3-202ENST00000355477 GLCCI1Q86VQ1 547 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 SPATA24Q86W54 205 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 HS3ST5Q8IZT8 346 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 OR8G5Q8NG78 346 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 OR51F2Q8NH61 342 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 HCAR1Q9BXC0 346 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 PDP1Q9P0J1 537 aaPredicted RBP15.53■□□□□ 0.08
CLN3-202ENST00000355477 IL19Q9UHD0 177 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 POMPQ9Y244 141 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 COMMD3-BMI1R4GMX3 469 aa15.53■□□□□ 0.08
CLN3-202ENST00000355477 TCRBV3S1A0A5B6 114 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 ARRDC5A6NEK1 342 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 H0YL77 283 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 GNGT2O14610 69 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 DNAJC8O75937 253 aaPredicted RBP15.52■□□□□ 0.08
CLN3-202ENST00000355477 LCATP04180 440 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 THBS2P35442 1172 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 SLC3A1Q07837 685 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 ACSM5Q6NUN0 579 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 ATG16L2Q8NAA4 619 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 BHLHE23Q8NDY6 225 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 OR10AD1Q8NGE0 317 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 SLCO4A1Q96BD0 722 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 OR2V2Q96R30 315 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 CADM1Q9BY67 442 aaKnown RBP15.52■□□□□ 0.08
CLN3-202ENST00000355477 MED20Q9H944 212 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 TMEM106BQ9NUM4 274 aa15.52■□□□□ 0.08
CLN3-202ENST00000355477 C5orf63A6NC05 138 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 FAM183AA6NL82 134 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 IQCF6A8MYZ5 107 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 H3BN98 237 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 ZNF593O00488 134 aaPredicted RBP15.51■□□□□ 0.07
CLN3-202ENST00000355477 GSC2O15499 205 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 MLNRO43193 412 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 PLPP2O43688 288 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 PRKACGP22612 351 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 FMO3P31513 532 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 TPTEP56180 551 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 SRSF2Q01130 221 aaKnown RBP15.51■□□□□ 0.07
CLN3-202ENST00000355477 GK2Q14410 553 aaPredicted RBP15.51■□□□□ 0.07
CLN3-202ENST00000355477 PCK2Q16822 640 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 LINC01590Q5TEZ4 76 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 DCXRQ7Z4W1 244 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 ZNF283Q8N7M2 679 aa15.51■□□□□ 0.07
CLN3-202ENST00000355477 OR13G1Q8NGZ3 307 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms