RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 FJX1Q86VR8 437 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ZNF584Q8IVC4 421 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 C20orf196Q8IYI0 205 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 NUBPLQ8TB37 319 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 DCUN1D4Q92564 292 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ZBTB8AQ96BR9 441 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 STACQ99469 402 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 REG4Q9BYZ8 158 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 PITHD1Q9GZP4 211 aaPredicted RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 WBP1LQ9NX94 342 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 CTSFQ9UBX1 484 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 KLK13Q9UKR3 277 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 IGHV3-15A0A0B4J1V0 119 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 ERCC1P07992 297 aaPredicted RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 DAOP14920 347 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 RPS4Y1P22090 263 aaKnown RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 INSM1Q01101 510 aaPredicted RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 TLE1Q04724 770 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 SERTAD2Q14140 314 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 NKAPLQ5M9Q1 402 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 NAA40Q86UY6 237 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 CCDC36Q8IYA8 594 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 NT5CQ8TCD5 201 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 C4orf45Q96LM5 186 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 SPOCK3Q9BQ16 436 aa7.77□□□□□ -1.17
USP40-203ENST00000427112 EXOSC3Q9NQT5 275 aaKnown RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 MRPL22Q9NWU5 206 aaKnown RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 AKAP7Q9P0M2 348 aaPredicted RBP7.77□□□□□ -1.17
USP40-203ENST00000427112 C2orf16Q68DN1 1984 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 C5orf63A6NC05 138 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 H7C417 338 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 TRIM77I1YAP6 450 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 OR2T1O43869 369 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 SLC6A9P48067 706 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 EFNA3P52797 238 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 ARFRP1Q13795 201 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 CEBPEQ15744 281 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 ATPAF1Q5TC12 328 aaPredicted RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 TMEM225Q6GV28 225 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 WBP2NLQ6ICG8 309 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 ETFRF1Q6IPR1 90 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 TIPARPQ7Z3E1 657 aaKnown RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 SYS1Q8N2H4 156 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 HGDQ93099 445 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 ELSPBP1Q96BH3 223 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 GPHA2Q96T91 129 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 KLHL13Q9P2N7 655 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 CKLFQ9UBR5 152 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 MTFP1Q9UDX5 166 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 SERTAD3Q9UJW9 196 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 MAFFQ9ULX9 164 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 VSIG4Q9Y279 399 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 TRAV14DV4A0A0A6YYC5 116 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 MFSD2BA6NFX1 497 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 SERPINA5P05154 406 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 GIPP09681 153 aaPredicted RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 NME2P22392 152 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 PTBP1P26599 531 aaKnown RBP eCLIP7.76□□□□□ -1.179e-8■■■■■ 26.8
USP40-203ENST00000427112 GPR3P46089 330 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 RPS4XP62701 263 aaKnown RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 PLEKHN1Q494U1 663 aaPredicted RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 RNASE10Q5GAN6 216 aaKnown RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 PDSS1Q5T2R2 415 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 C5orf24Q7Z6I8 188 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 PXT1Q8NFP0 134 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 OR51E1Q8TCB6 317 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 SEH1LQ96EE3 360 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 MRPS24Q96EL2 167 aaKnown RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 LIN37Q96GY3 246 aaPredicted RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 G6PC3Q9BUM1 346 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 BIN3Q9NQY0 253 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 UBQLN4Q9NRR5 601 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 ICAM5Q9UMF0 924 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 NCOA6Q14686 2063 aaPredicted RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 OR6C65A6NJZ3 312 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 XRCC3O43542 346 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 ZNF354AO60765 605 aaPredicted RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 EIF3GO75821 320 aaKnown RBP eCLIP7.76□□□□□ -1.17
USP40-203ENST00000427112 TGM6O95932 706 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 S100A2P29034 98 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 BDKRB2P30411 391 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 CD96P40200 585 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 PRPS1P60891 318 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 MFAP5Q13361 173 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 AWAT2Q6E213 333 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 PLXDC2Q6UX71 529 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 BAIAP2L2Q6UXY1 529 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 LRRC18Q8N456 261 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 OR52H1Q8NGJ2 320 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 CTHRC1Q96CG8 243 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 METTL8Q9H825 291 aaKnown RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 ZNF701Q9NV72 531 aaPredicted RBP7.76□□□□□ -1.17
USP40-203ENST00000427112 PCDHB10Q9UN67 800 aa7.76□□□□□ -1.17
USP40-203ENST00000427112 PI4KAP42356 2102 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 A0A1W2PPC1 479 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 F8W036 122 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 GNRH1P01148 92 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 CD2P06729 351 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 HCKP08631 526 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms