RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 TTTY12Q9BZ98 90 aa16.79■□□□□ 0.28
USP39-202ENST00000409025 NIPAL2Q9H841 368 aa16.79■□□□□ 0.28
USP39-202ENST00000409025 FAM206AQ9NX38 181 aa16.79■□□□□ 0.28
USP39-202ENST00000409025 PCDHGA9Q9Y5G4 932 aaKnown RBP16.79■□□□□ 0.28
USP39-202ENST00000409025 A0A1B0GVC2 190 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 A6NIN4 97 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 A6NL46 340 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 DHHO43323 396 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 SSX4O60224 188 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 CALCBP10092 127 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 MSR1P21757 451 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 HSD11B1P28845 292 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 PLGLB1Q02325 96 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 BAIAP2L2Q6UXY1 529 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 C20orf196Q8IYI0 205 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 CADM3Q8N126 398 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 MDS2Q8NDY4 140 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 ROBO4Q8WZ75 1007 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 CPNE4Q96A23 557 aaPredicted RBP16.78■□□□□ 0.28
USP39-202ENST00000409025 NELFAQ9H3P2 528 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 LIN7BQ9HAP6 207 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 ETAA1Q9NY74 926 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 CKLFQ9UBR5 152 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 FOXD3Q9UJU5 478 aaPredicted RBP16.78■□□□□ 0.28
USP39-202ENST00000409025 RCE1Q9Y256 329 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 FLVCR1Q9Y5Y0 555 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 LOC107986453A0A1B0GWG9 222 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 NME2P1O60361 137 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 HNRNPCP07910 306 aaKnown RBP eCLIP16.78■□□□□ 0.28
USP39-202ENST00000409025 NME2P22392 152 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 NR4A2P43354 598 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 RFX2P48378 723 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 CLDN15P56746 228 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 PITPNAQ00169 270 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 ABLIM2Q6H8Q1 611 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 IGF2-ASQ6U949 168 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 FOXL2NBQ6ZUU3 175 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 VASH2Q86V25 355 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 DNAAF1Q8NEP3 725 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 OR13C3Q8NGS6 347 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 ULBP2Q9BZM5 246 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 C11orf54Q9H0W9 315 aaPredicted RBP16.78■□□□□ 0.28
USP39-202ENST00000409025 IRF2BPLQ9H1B7 796 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 FOXJ3Q9UPW0 622 aa16.78■□□□□ 0.28
USP39-202ENST00000409025 ZNF716A6NP11 495 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 FAM166BA8MTA8 275 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 KLRC4-KLRK1H3BQV0 150 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 CD46P15529 392 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 ZNF84P51523 738 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 SOX8P57073 446 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 FCRLAQ7L513 359 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 GALNTL5Q7Z4T8 443 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 RBM24Q9BX46 236 aaKnown RBP16.77■□□□□ 0.28
USP39-202ENST00000409025 HDHD2Q9H0R4 259 aa16.77■□□□□ 0.28
USP39-202ENST00000409025 PLA2G10O15496 165 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 UBL3O95164 117 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 MAGEA5P43359 124 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 MEOX1P50221 254 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 CLDN12P56749 244 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 ELMOD2Q8IZ81 293 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 RFT1Q96AA3 541 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 ZNF775Q96BV0 537 aaPredicted RBP16.76■□□□□ 0.27
USP39-202ENST00000409025 LRFN3Q9BTN0 628 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 ZNF416Q9BWM5 594 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 PBOV1Q9GZY1 135 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 MOB1AQ9H8S9 216 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 RABL2AQ9UBK7 228 aaPredicted RBP16.76■□□□□ 0.27
USP39-202ENST00000409025 RABL2BQ9UNT1 228 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 CAMK2AQ9UQM7 478 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 ETV7Q9Y603 341 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 MED13Q9UHV7 2174 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 P2RY10O00398 339 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 RER1O15258 196 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 DOK2O60496 412 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 CELA3AP09093 270 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 PRKAR1AP10644 381 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 CEACAM1P13688 526 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 FSTP19883 344 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 PSMA6P60900 246 aaKnown RBP16.76■□□□□ 0.27
USP39-202ENST00000409025 MZT2BQ6NZ67 158 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 AAED1Q7RTV5 226 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 CMTM4Q8IZR5 234 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 TMEM251Q8N6I4 163 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 NEDD4LQ96PU5 975 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 ABHD1Q96SE0 405 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 THAP7Q9BT49 309 aaPredicted RBP16.76■□□□□ 0.27
USP39-202ENST00000409025 OR5V1Q9UGF6 321 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 STEAP1Q9UHE8 339 aa16.76■□□□□ 0.27
USP39-202ENST00000409025 TTLL8A6PVC2 850 aa16.75■□□□□ 0.27
USP39-202ENST00000409025 CYTIPO60759 359 aa16.75■□□□□ 0.27
USP39-202ENST00000409025 TTRP02766 147 aa16.75■□□□□ 0.27
USP39-202ENST00000409025 LHX2P50458 406 aa16.75■□□□□ 0.27
USP39-202ENST00000409025 GRB2P62993 217 aaKnown RBP16.75■□□□□ 0.27
USP39-202ENST00000409025 ZNF57Q68EA5 555 aaPredicted RBP16.75■□□□□ 0.27
USP39-202ENST00000409025 ZNF845Q96IR2 970 aaPredicted RBP16.75■□□□□ 0.27
USP39-202ENST00000409025 NEURL2Q9BR09 285 aa16.75■□□□□ 0.27
USP39-202ENST00000409025 PNRC2Q9NPJ4 139 aaKnown RBP16.75■□□□□ 0.27
USP39-202ENST00000409025 PTPRBP23467 1997 aa16.75■□□□□ 0.27
USP39-202ENST00000409025 NKX2-8O15522 239 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 GLSO94925 669 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms