RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DTX1Q86Y01 620 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ZDHHC23Q8IYP9 409 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ZNF615Q8N8J6 731 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 APH1BQ8WW43 257 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 GPR137Q96N19 417 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SF3B5Q9BWJ5 86 aaKnown RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 XYLT2Q9H1B5 865 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 CTPS2Q9NRF8 586 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 IGSF5Q9NSI5 407 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PDP1Q9P0J1 537 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 ATPIF1Q9UII2 106 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 MOKQ9UQ07 419 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SLC17A4Q9Y2C5 497 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 GOLT1BQ9Y3E0 138 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 GOSR2O14653 212 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SLC16A7O60669 478 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 CRPP02741 224 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 VAMP1P23763 118 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 KIR2DS2P43631 304 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TAS2R39P59534 338 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PKIAP61925 76 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TAGLNQ01995 201 aaKnown RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 SSX1Q16384 188 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TIGITQ495A1 244 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 OR5AS1Q8N127 324 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 LRRC18Q8N456 261 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 FRMD1Q8N878 549 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 WDR20Q8TBZ3 569 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 GALMQ96C23 342 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PCYT2Q99447 389 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PFDN5Q99471 154 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 RBM4BQ9BQ04 359 aaKnown RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 ARL6Q9H0F7 186 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TBC1D29Q9UFV1 150 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PCNX1Q96RV3 2341 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ACACBO00763 2458 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 IGHV3-20A0A0C4DH32 117 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 DVL1O14640 695 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 MAFKO60675 156 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 NOS1APO75052 506 aaPredicted RBP3.68□□□□□ -1.82
USH2A-202ENST00000366942 KRASP01116 189 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 GAPDHP04406 335 aaKnown RBP3.68□□□□□ -1.82
USH2A-202ENST00000366942 FOSL1P15407 271 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 IMPDH1P20839 514 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 DVL1P1P54792 670 aaPredicted RBP3.68□□□□□ -1.82
USH2A-202ENST00000366942 TAS2R31P59538 309 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TMEM64Q6YI46 380 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 UBE3DQ7Z6J8 389 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 UBE2Q1Q7Z7E8 422 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TGIF2LYQ8IUE0 185 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TGIF2LXQ8IUE1 241 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 OR13C8Q8NGS7 320 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 S100ZQ8WXG8 99 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 POM121L2Q96KW2 1035 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 FOXB1Q99853 325 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TMEM147Q9BVK8 224 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 LAT2Q9GZY6 243 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 CDC42EP4Q9H3Q1 356 aaKnown RBP3.68□□□□□ -1.82
USH2A-202ENST00000366942 LIN7BQ9HAP6 207 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 SVILO95425 2214 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TMEM30CPA0ZSE6 113 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 FRG2CA6NGY1 282 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 PRRT4C9JH25 899 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TGFB1I1O43294 461 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 SCGB1D2O95969 90 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 PTTG1O95997 202 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 PRR35P0CG20 571 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 GDNFP39905 211 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 ALDH3B2P48448 385 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 GIPRP48546 466 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 COMPP49747 757 aaPredicted RBP3.68□□□□□ -1.82
USH2A-202ENST00000366942 SORDQ00796 357 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 THEM4Q5T1C6 240 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 PWWP2BQ6NUJ5 590 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 OR6V1Q8N148 313 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TMEM151AQ8N4L1 468 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 SEMA6DQ8NFY4 1073 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 OR52N2Q8NGI0 321 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 THAP6Q8TBB0 222 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 NPRL2Q8WTW4 380 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 PTP4A1Q93096 173 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 NEURL3Q96EH8 262 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 FYTTD1Q96QD9 318 aaKnown RBP3.68□□□□□ -1.82
USH2A-202ENST00000366942 IGHV3-9P01782 118 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 OPN1LWP04000 364 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 CHRM2P08172 466 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 ACKR3P25106 362 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 MTPNP58546 118 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 RAC3P60763 192 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TOMM34Q15785 309 aaPredicted RBP3.68□□□□□ -1.82
USH2A-202ENST00000366942 PABPC1L2AQ5JQF8 200 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 TOR2AQ5JU69 321 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 WDR73Q6P4I2 378 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 GPR141Q7Z602 305 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 GPR148Q8TDV2 347 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 ZNF516Q92618 1163 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 KHSRPQ92945 711 aaKnown RBP eCLIP3.68□□□□□ -1.82
USH2A-202ENST00000366942 STACQ99469 402 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 PAAF1Q9BRP4 392 aa3.68□□□□□ -1.82
USH2A-202ENST00000366942 ADAT1Q9BUB4 502 aaKnown RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms