RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 MCM10Q7L590 875 aa12.9□□□□□ -0.35
PTPN4-201ENST00000263708 CDC5LQ99459 802 aaKnown RBP12.9□□□□□ -0.35
PTPN4-201ENST00000263708 CLSTN2Q9H4D0 955 aa12.9□□□□□ -0.35
PTPN4-201ENST00000263708 SEPT10Q9P0V9 454 aa12.9□□□□□ -0.35
PTPN4-201ENST00000263708 DNAJC21Q5F1R6 531 aaKnown RBP12.89□□□□□ -0.35
PTPN4-201ENST00000263708 GSDMBQ8TAX9 411 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 NUF2Q9BZD4 464 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 CRNKL1Q9BZJ0 848 aaKnown RBP12.89□□□□□ -0.35
PTPN4-201ENST00000263708 CTAGE9A4FU28 777 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 UBASH3AP57075 661 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 CFAP70Q5T0N1 1121 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 OPA1O60313 960 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 KRT5P13647 590 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 ANKLE2Q86XL3 938 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 USHBP1Q8N6Y0 703 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 TMEM57Q8N5G2 664 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 SMARCC2Q8TAQ2 1214 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 ANKRD30BQ9BXX2 1392 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 PPP2R5DQ14738 602 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 GIPC1O14908 333 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTPN4-201ENST00000263708 ANKFY1Q9P2R3 1169 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 ZEB2O60315 1214 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 CCDC102BQ68D86 513 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 AFG3L2Q9Y4W6 797 aa12.89□□□□□ -0.35
PTPN4-201ENST00000263708 TACC1O75410 805 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 SETDB1Q15047 1291 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 CPLX4Q7Z7G2 160 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 MICALL1Q8N3F8 863 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 IFT81Q8WYA0 676 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 NACA2Q9H009 215 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 MYOM3Q5VTT5 1437 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 JAKMIP2Q96AA8 810 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 HDAC9Q9UKV0 1011 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 CASQ2O14958 399 aaPredicted RBP12.88□□□□□ -0.35
PTPN4-201ENST00000263708 NOC2LQ9Y3T9 749 aaKnown RBP12.88□□□□□ -0.35
PTPN4-201ENST00000263708 VEZTQ9HBM0 779 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 C6orf50Q9HD87 102 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 WWC3Q9ULE0 1092 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 LMBR1Q8WVP7 490 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 B4DLN1 442 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 LDHCP07864 332 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 MRPL12P52815 198 aaKnown RBP12.88□□□□□ -0.35
PTPN4-201ENST00000263708 INF2Q27J81 1249 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 ERCC6LQ2NKX8 1250 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 CTAGE1Q96RT6 745 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 OGFOD1Q8N543 542 aa12.88□□□□□ -0.35
PTPN4-201ENST00000263708 ASIC1P78348 528 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 GDPD2Q9HCC8 539 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 KRT9P35527 623 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 SYKP43405 635 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 WHAMMQ8TF30 809 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 SLC12A5Q9H2X9 1139 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 LIMCH1Q9UPQ0 1083 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 DIXDC1Q155Q3 683 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 UBLCP1Q8WVY7 318 aaPredicted RBP12.87□□□□□ -0.35
PTPN4-201ENST00000263708 DAPK3O43293 454 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 DDX19AQ9NUU7 478 aaKnown RBP12.87□□□□□ -0.35
PTPN4-201ENST00000263708 MRRFQ96E11 262 aaKnown RBP12.87□□□□□ -0.35
PTPN4-201ENST00000263708 PPME1Q9Y570 386 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 CCDC171Q6TFL3 1326 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 ARFGAP3Q9NP61 516 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 FAM114A2Q9NRY5 505 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 SAMD15Q9P1V8 674 aa12.87□□□□□ -0.35
PTPN4-201ENST00000263708 SPDYE3A6NKU9 549 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 IVLP07476 585 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 CTAGE15A4D2H0 777 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 CTAGE8P0CG41 777 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 CTAGE6Q86UF2 777 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 CTAGE4Q8IX94 777 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 SWAP70Q9UH65 585 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 NAPAP54920 295 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 WTAPQ15007 396 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 GOLGA1Q92805 767 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 NOD1Q9Y239 953 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 GKAP1Q5VSY0 366 aaPredicted RBP12.86□□□□□ -0.35
PTPN4-201ENST00000263708 ORC3Q9UBD5 711 aaPredicted RBP12.86□□□□□ -0.35
PTPN4-201ENST00000263708 ITIH3Q06033 890 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 TRIM6Q9C030 488 aaPredicted RBP12.86□□□□□ -0.35
PTPN4-201ENST00000263708 SNRKQ9NRH2 765 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 RBM26Q5T8P6 1007 aaKnown RBP12.86□□□□□ -0.35
PTPN4-201ENST00000263708 NBPF6Q5VWK0 638 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 INTS8Q75QN2 995 aaKnown RBP12.86□□□□□ -0.35
PTPN4-201ENST00000263708 NBPF5PQ86XG9 351 aaPredicted RBP12.86□□□□□ -0.35
PTPN4-201ENST00000263708 NCOA7Q8NI08 942 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 NBPF4Q96M43 638 aa12.86□□□□□ -0.35
PTPN4-201ENST00000263708 HARSP12081 509 aaKnown RBP12.85□□□□□ -0.35
PTPN4-201ENST00000263708 ATP11AP98196 1134 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 TLDC2A0PJX2 215 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 WDR46O15213 610 aaKnown RBP12.85□□□□□ -0.35
PTPN4-201ENST00000263708 NBPF7P0C2Y1 421 aaPredicted RBP12.85□□□□□ -0.35
PTPN4-201ENST00000263708 SLC8A3P57103 927 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 PRR16Q569H4 304 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 PAXBP1Q9Y5B6 917 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 CLUL1Q15846 466 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 EP400NLQ6ZTU2 488 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 VCX3BQ9H321 246 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 AFAP1L2Q8N4X5 818 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 ZBTB3Q9H5J0 574 aa12.85□□□□□ -0.35
PTPN4-201ENST00000263708 SDCCAG8Q86SQ7 713 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms