RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 V9GYY5 206 aaPredicted RBP12.69□□□□□ -0.38
USP28-201ENST00000003302 ZHX1Q9UKY1 873 aaPredicted RBP12.68□□□□□ -0.38
USP28-201ENST00000003302 CHD2O14647 1828 aaKnown RBP12.68□□□□□ -0.38
USP28-201ENST00000003302 PHKG2P15735 406 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 KRT28Q7Z3Y7 464 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 GTF3C6Q969F1 213 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 USP28Q96RU2 1077 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 SPTLC3Q9NUV7 552 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 CASP7P55210 303 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 KRT85P78386 507 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 RUFY2Q8WXA3 655 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 ZBTB3Q9H5J0 574 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 HSP90AB4PQ58FF6 505 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 ATG9AQ7Z3C6 839 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 TNMDQ9H2S6 317 aa12.68□□□□□ -0.38
USP28-201ENST00000003302 U2AF2P26368 475 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP28-201ENST00000003302 PHF14O94880 888 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 MAP3K11Q16584 847 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 AIFM3Q96NN9 605 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 METTL22Q9BUU2 404 aaPredicted RBP12.67□□□□□ -0.38
USP28-201ENST00000003302 INCENPQ9NQS7 918 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 KAT6BQ8WYB5 2073 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 ADORA1P30542 326 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 ISM2Q6H9L7 571 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 BICD2Q8TD16 824 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 NEK1Q96PY6 1258 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 SH2B1Q9NRF2 756 aaPredicted RBP12.67□□□□□ -0.38
USP28-201ENST00000003302 HSP90B1P14625 803 aaKnown RBP12.67□□□□□ -0.38
USP28-201ENST00000003302 MCM5P33992 734 aa12.67□□□□□ -0.38
USP28-201ENST00000003302 ZNF330Q9Y3S2 320 aaPredicted RBP12.67□□□□□ -0.38
USP28-201ENST00000003302 DYNC1I1O14576 645 aa12.66□□□□□ -0.38
USP28-201ENST00000003302 USP54Q70EL1 1684 aa12.66□□□□□ -0.38
USP28-201ENST00000003302 SNAP23O00161 211 aa12.66□□□□□ -0.38
USP28-201ENST00000003302 FAM200AQ8TCP9 573 aa12.66□□□□□ -0.38
USP28-201ENST00000003302 FDPSP14324 419 aaKnown RBP12.66□□□□□ -0.38
USP28-201ENST00000003302 RXRAP19793 462 aa12.66□□□□□ -0.38
USP28-201ENST00000003302 M0R2C6 588 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 FOXO4P98177 505 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 SNW1Q13573 536 aaKnown RBP12.65□□□□□ -0.38
USP28-201ENST00000003302 USPL1Q5W0Q7 1092 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 FAM184AQ8NB25 1140 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 NSUN7Q8NE18 718 aaKnown RBP12.65□□□□□ -0.38
USP28-201ENST00000003302 SENP2Q9HC62 589 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 JCADQ9P266 1359 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 CCDC192P0DO97 292 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 KCNH5Q8NCM2 988 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 ZNF165P49910 485 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 AMOTQ4VCS5 1084 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 LRRN4CLQ8ND94 238 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 UVSSAQ2YD98 709 aa12.65□□□□□ -0.38
USP28-201ENST00000003302 TERF1P54274 439 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 OSBP2Q969R2 916 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 TRIM5Q9C035 493 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 PPP4R3BQ5MIZ7 849 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 GPATCH3Q96I76 525 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 COPRSQ9NQ92 184 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 AFDNP55196 1824 aaKnown RBP12.64□□□□□ -0.39
USP28-201ENST00000003302 EPB41L2O43491 1005 aaKnown RBP12.64□□□□□ -0.39
USP28-201ENST00000003302 ATP5JP18859 108 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 TRHP20396 242 aaPredicted RBP12.64□□□□□ -0.39
USP28-201ENST00000003302 CSPP1Q1MSJ5 1256 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 ANKLE2Q86XL3 938 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 ZSCAN31Q96LW9 406 aaPredicted RBP12.64□□□□□ -0.39
USP28-201ENST00000003302 NCAPD2Q15021 1401 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 NEDD4P46934 1319 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 A0A1B0GVL5 298 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 PTPDC1A2A3K4 754 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 POLR3DP05423 398 aaPredicted RBP12.64□□□□□ -0.39
USP28-201ENST00000003302 IQCB1Q15051 598 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 ZSCAN25Q6NSZ9 544 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 ADGRL3Q9HAR2 1447 aa12.64□□□□□ -0.39
USP28-201ENST00000003302 ZBTB9Q96C00 473 aa12.63□□□□□ -0.39
USP28-201ENST00000003302 TRMT1Q9NXH9 659 aaKnown RBP12.63□□□□□ -0.39
USP28-201ENST00000003302 ERC1Q8IUD2 1116 aa12.63□□□□□ -0.39
USP28-201ENST00000003302 MAST3O60307 1309 aa12.63□□□□□ -0.39
USP28-201ENST00000003302 MYO5AQ9Y4I1 1855 aaKnown RBP12.63□□□□□ -0.39
USP28-201ENST00000003302 BIN1O00499 593 aa12.63□□□□□ -0.39
USP28-201ENST00000003302 STK11IPQ8N1F8 1099 aa12.63□□□□□ -0.39
USP28-201ENST00000003302 CLSTN2Q9H4D0 955 aa12.63□□□□□ -0.39
USP28-201ENST00000003302 HSPD1P10809 573 aaKnown RBP12.62□□□□□ -0.39
USP28-201ENST00000003302 ZNF75DP51815 510 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 PLA2G4DQ86XP0 818 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 RAPGEF4Q8WZA2 1011 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 CSB-PGBD3P0DP91 1061 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 GOLGA8FQ08AF8 430 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 GOLGA8DPQ0D2H9 430 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 FILIP1Q7Z7B0 1213 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 SMIM22K7EJ46 135 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 ZSCAN20P17040 1043 aaPredicted RBP12.62□□□□□ -0.39
USP28-201ENST00000003302 DRC7Q8IY82 874 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 HAUS7Q99871 368 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 ATP6V1DQ9Y5K8 247 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 E7EWF7 191 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 FKBP4Q02790 459 aaKnown RBP eCLIP12.62□□□□□ -0.39
USP28-201ENST00000003302 RABL6Q3YEC7 729 aaPredicted RBP12.62□□□□□ -0.39
USP28-201ENST00000003302 CLIC4Q9Y696 253 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 GLI3P10071 1580 aa12.62□□□□□ -0.39
USP28-201ENST00000003302 KIF28PB7ZC32 967 aa12.61□□□□□ -0.39
USP28-201ENST00000003302 RBM43Q6ZSC3 357 aaKnown RBP12.61□□□□□ -0.39
USP28-201ENST00000003302 NEXNQ0ZGT2 675 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms