RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 C10orf90Q96M02 699 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TMED7Q9Y3B3 224 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 MICAL3Q7RTP6 2002 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 MUC6Q6W4X9 2439 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 A0A1W2PN81 502 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 FAM159BA6NKW6 160 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 DNPH1O43598 174 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZG16O60844 167 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 CST3P01034 146 aaPredicted RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 LINC00032P0C843 101 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 HNRNPH3P31942 346 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 CHRNA7P36544 502 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TNFRSF17Q02223 184 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 EVX2Q03828 476 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TESK1Q15569 626 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ANKRD16Q6P6B7 361 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 SLC16A11Q8NCK7 471 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZBTB44Q8NCP5 570 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR2M7Q8NG81 312 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 MCFD2Q8NI22 146 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 IL1F10Q8WWZ1 152 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ASB10Q8WXI3 467 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 S100A16Q96FQ6 103 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 SEC22AQ96IW7 307 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZNF700Q9H0M5 742 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 IKZF5Q9H5V7 419 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OCIAD1Q9NX40 245 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 EHD3Q9NZN3 535 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TO15178 435 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 AREGP15514 252 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 GKP32189 559 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 CD97P48960 835 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ACTBP60709 375 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 HNF4GQ14541 408 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 BCL7AQ4VC05 210 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 HACD4Q5VWC8 232 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TAS1R1Q7RTX1 841 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 THNSL2Q86YJ6 484 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 LILRB2Q8N423 598 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR2Z1Q8NG97 314 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR51A2Q8NGJ7 313 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TMEM203Q969S6 136 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 NICN1Q9BSH3 213 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TSSK6Q9BXA6 273 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 RNF38Q9H0F5 515 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 MAGT1Q9H0U3 335 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ISYNA1Q9NPH2 558 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 CRIM1Q9NZV1 1036 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ADAMTSL3P82987 1691 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 UTS2O95399 124 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ABHD2P08910 425 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZP3P21754 424 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 SDC2P34741 201 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 LOXL3P58215 753 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 BPIFB3P59826 476 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ODF1Q14990 250 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 C11orf91Q3C1V1 193 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 UBE2NLQ5JXB2 153 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 PAQR3Q6TCH7 311 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 CLEC14AQ86T13 490 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 FMR1NBQ8N0W7 255 aaPredicted RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 PRR18Q8N4B5 295 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR2T33Q8NG76 320 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 UFD1Q92890 307 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 PLPPR2Q96GM1 343 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 MSLNLQ96KJ4 702 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZNF681Q96N22 645 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZMAT2Q96NC0 199 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 DOK1Q99704 481 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 PIF1Q9H611 641 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 RABAC1Q9UI14 185 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 KIAA1210Q9ULL0 1709 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 RTTNQ86VV8 2226 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 MT-ND1P03886 318 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 C2P06681 752 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 IL3P08700 152 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 HOXD8P13378 290 aaPredicted RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 BMP6P22004 513 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 MTCP1P56278 107 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 LCN6P62502 163 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 SRPXP78539 464 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 KCNJ11Q14654 390 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 EXOSC7Q15024 291 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR4D1Q15615 310 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TRMT12Q53H54 448 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 XKR7Q5GH72 579 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 MEDAGQ5VYS4 303 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 AFMIDQ63HM1 303 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZNF529Q6P280 563 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ASRGL1Q7L266 308 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 COMTD1Q86VU5 262 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 EGFL6Q8IUX8 553 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 FAM58AQ8N1B3 248 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR52H1Q8NGJ2 320 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TERB2Q8NHR7 220 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TWIST2Q8WVJ9 160 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TMBIM1Q969X1 311 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZNF707Q96C28 371 aaPredicted RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 C8orf44Q96CB5 159 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 SAT2Q96F10 170 aaPredicted RBP3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms