RNA–Protein interactions for RNA: ENST00000421670.3

DDX55-203, Transcript of DEAD-box helicase 55, humanhuman

TSL 1 (best) BASIC

Gene DDX55, Length 1,574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-203ENST00000421670 NLRP3Q96P20 1036 aa19.68■□□□□ 0.74
DDX55-203ENST00000421670 HSP90B1P14625 803 aaKnown RBP19.67■□□□□ 0.74
DDX55-203ENST00000421670 LMBR1LQ6UX01 489 aa19.67■□□□□ 0.74
DDX55-203ENST00000421670 PPP1R1BQ9UD71 204 aaPredicted RBP19.67■□□□□ 0.74
DDX55-203ENST00000421670 CHMP3Q9Y3E7 222 aa19.67■□□□□ 0.74
DDX55-203ENST00000421670 TTLL11Q8NHH1 800 aa19.66■□□□□ 0.74
DDX55-203ENST00000421670 HDAC5Q9UQL6 1122 aa19.66■□□□□ 0.74
DDX55-203ENST00000421670 FAM161AQ3B820 660 aa19.66■□□□□ 0.74
DDX55-203ENST00000421670 RABL6Q3YEC7 729 aaPredicted RBP19.66■□□□□ 0.74
DDX55-203ENST00000421670 GREM2Q9H772 168 aa19.66■□□□□ 0.74
DDX55-203ENST00000421670 UTRNP46939 3433 aa19.65■□□□□ 0.74
DDX55-203ENST00000421670 PDE6BP35913 854 aa19.65■□□□□ 0.74
DDX55-203ENST00000421670 CEP85Q6P2H3 762 aa19.65■□□□□ 0.74
DDX55-203ENST00000421670 CSF1RP07333 972 aa19.64■□□□□ 0.73
DDX55-203ENST00000421670 SF3B3Q15393 1217 aaKnown RBP19.64■□□□□ 0.73
DDX55-203ENST00000421670 CRY2Q49AN0 593 aa19.64■□□□□ 0.73
DDX55-203ENST00000421670 CCDC152Q4G0S7 254 aa19.64■□□□□ 0.73
DDX55-203ENST00000421670 A0A1B0GUL6 1792 aa19.63■□□□□ 0.73
DDX55-203ENST00000421670 PNMA6EA0A0J9YXQ4 647 aa19.63■□□□□ 0.73
DDX55-203ENST00000421670 KLRG2A4D1S0 409 aaPredicted RBP19.63■□□□□ 0.73
DDX55-203ENST00000421670 CHRNA5P30532 468 aa19.63■□□□□ 0.73
DDX55-203ENST00000421670 PCDHB15Q9Y5E8 787 aa19.63■□□□□ 0.73
DDX55-203ENST00000421670 SRGAP3O43295 1099 aa19.62■□□□□ 0.73
DDX55-203ENST00000421670 C2CD5Q86YS7 1000 aa19.62■□□□□ 0.73
DDX55-203ENST00000421670 RPGRQ92834 1020 aaKnown RBP19.62■□□□□ 0.73
DDX55-203ENST00000421670 SEC31BQ9NQW1 1179 aa19.62■□□□□ 0.73
DDX55-203ENST00000421670 RTL9Q8NET4 1388 aa19.62■□□□□ 0.73
DDX55-203ENST00000421670 SRGNP10124 158 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 ITGA6P23229 1130 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 MTX1Q13505 466 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 AAMPQ13685 434 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 SIRT2Q8IXJ6 389 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 SLX4Q8IY92 1834 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 H0YIN7 160 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 CD2APQ9Y5K6 639 aa19.61■□□□□ 0.73
DDX55-203ENST00000421670 KLHDC4Q8TBB5 520 aa19.6■□□□□ 0.73
DDX55-203ENST00000421670 FHDC1Q9C0D6 1143 aaPredicted RBP19.6■□□□□ 0.73
DDX55-203ENST00000421670 A0A0G2JLW4 131 aa19.59■□□□□ 0.73
DDX55-203ENST00000421670 DPEP1P16444 411 aa19.59■□□□□ 0.73
DDX55-203ENST00000421670 ATP8B2P98198 1209 aa19.59■□□□□ 0.73
DDX55-203ENST00000421670 IFIT5Q13325 482 aaKnown RBP19.59■□□□□ 0.73
DDX55-203ENST00000421670 CCDC57Q2TAC2 916 aa19.59■□□□□ 0.73
DDX55-203ENST00000421670 DDX46Q7L014 1031 aaKnown RBP19.59■□□□□ 0.73
DDX55-203ENST00000421670 NLGN2Q8NFZ4 835 aa19.59■□□□□ 0.73
DDX55-203ENST00000421670 ZNF594Q96JF6 807 aaPredicted RBP19.59■□□□□ 0.73
DDX55-203ENST00000421670 LRRC37AA6NMS7 1700 aa19.59■□□□□ 0.73
DDX55-203ENST00000421670 ANKRD18BA2A2Z9 1011 aa19.58■□□□□ 0.73
DDX55-203ENST00000421670 NPR1P16066 1061 aa19.58■□□□□ 0.73
DDX55-203ENST00000421670 RPAP2Q8IXW5 612 aaPredicted RBP19.58■□□□□ 0.73
DDX55-203ENST00000421670 ZNF622Q969S3 477 aaKnown RBP eCLIP19.58■□□□□ 0.731e-6■■■□□ 16.1
DDX55-203ENST00000421670 MASTLQ96GX5 879 aa19.58■□□□□ 0.73
DDX55-203ENST00000421670 HOXA10P31260 410 aaPredicted RBP19.57■□□□□ 0.72
DDX55-203ENST00000421670 RFX5P48382 616 aaPredicted RBP19.57■□□□□ 0.72
DDX55-203ENST00000421670 TGFB2P61812 414 aa19.57■□□□□ 0.72
DDX55-203ENST00000421670 POLA2Q14181 598 aa19.57■□□□□ 0.72
DDX55-203ENST00000421670 SSH3Q8TE77 659 aa19.57■□□□□ 0.72
DDX55-203ENST00000421670 CELF1Q92879 486 aaKnown RBP19.57■□□□□ 0.72
DDX55-203ENST00000421670 RBM17Q96I25 401 aaKnown RBP19.57■□□□□ 0.72
DDX55-203ENST00000421670 PA2G4Q9UQ80 394 aaKnown RBP19.57■□□□□ 0.72
DDX55-203ENST00000421670 KCNA3P22001 575 aa19.57■□□□□ 0.72
DDX55-203ENST00000421670 TAF7LQ5H9L4 462 aa19.57■□□□□ 0.72
DDX55-203ENST00000421670 WWC3Q9ULE0 1092 aa19.57■□□□□ 0.72
DDX55-203ENST00000421670 PDZRN3Q9UPQ7 1066 aa19.57■□□□□ 0.72
DDX55-203ENST00000421670 PTPN12Q05209 780 aaKnown RBP19.56■□□□□ 0.72
DDX55-203ENST00000421670 GRAPQ13588 217 aa19.56■□□□□ 0.72
DDX55-203ENST00000421670 STYK1Q6J9G0 422 aa19.56■□□□□ 0.72
DDX55-203ENST00000421670 SLC51AQ86UW1 340 aa19.56■□□□□ 0.72
DDX55-203ENST00000421670 GRAPLQ8TC17 118 aaPredicted RBP19.56■□□□□ 0.72
DDX55-203ENST00000421670 CDC5LQ99459 802 aaKnown RBP19.56■□□□□ 0.72
DDX55-203ENST00000421670 SIL1Q9H173 461 aa19.56■□□□□ 0.72
DDX55-203ENST00000421670 ARFGEF1Q9Y6D6 1849 aa19.56■□□□□ 0.72
DDX55-203ENST00000421670 CRAMP1Q96RY5 1269 aa19.55■□□□□ 0.72
DDX55-203ENST00000421670 HMMRO75330 724 aa19.54■□□□□ 0.72
DDX55-203ENST00000421670 ANKRD18AQ8IVF6 992 aa19.54■□□□□ 0.72
DDX55-203ENST00000421670 PRPF40BQ6NWY9 871 aaKnown RBP19.53■□□□□ 0.72
DDX55-203ENST00000421670 SYT17Q9BSW7 474 aa19.53■□□□□ 0.72
DDX55-203ENST00000421670 PUS3Q9BZE2 481 aaKnown RBP19.53■□□□□ 0.72
DDX55-203ENST00000421670 ALDH1B1P30837 517 aa19.53■□□□□ 0.72
DDX55-203ENST00000421670 IGHMBP2P38935 993 aaKnown RBP19.53■□□□□ 0.72
DDX55-203ENST00000421670 RPS8P62241 208 aaKnown RBP19.53■□□□□ 0.72
DDX55-203ENST00000421670 COPRSQ9NQ92 184 aa19.53■□□□□ 0.72
DDX55-203ENST00000421670 LTBP1Q14766 1721 aa19.52■□□□□ 0.72
DDX55-203ENST00000421670 PPEF1O14829 653 aaPredicted RBP19.52■□□□□ 0.71
DDX55-203ENST00000421670 LRRC24Q50LG9 513 aa19.52■□□□□ 0.71
DDX55-203ENST00000421670 LDHAL6AQ6ZMR3 332 aa19.52■□□□□ 0.71
DDX55-203ENST00000421670 CNKSR1Q969H4 720 aa19.52■□□□□ 0.71
DDX55-203ENST00000421670 MPHOSPH8Q99549 860 aa19.52■□□□□ 0.71
DDX55-203ENST00000421670 EXOC6BQ9Y2D4 811 aa19.52■□□□□ 0.71
DDX55-203ENST00000421670 IGHDP01880 384 aa19.51■□□□□ 0.71
DDX55-203ENST00000421670 HDAC1Q13547 482 aaPredicted RBP19.51■□□□□ 0.71
DDX55-203ENST00000421670 CNNM1Q9NRU3 951 aa19.51■□□□□ 0.71
DDX55-203ENST00000421670 PIM2Q9P1W9 311 aa19.51■□□□□ 0.71
DDX55-203ENST00000421670 SURF6O75683 361 aaKnown RBP19.5■□□□□ 0.71
DDX55-203ENST00000421670 ERICH6BQ5W0A0 696 aa19.5■□□□□ 0.71
DDX55-203ENST00000421670 OLFM4Q6UX06 510 aa19.5■□□□□ 0.71
DDX55-203ENST00000421670 TTLL6Q8N841 843 aa19.5■□□□□ 0.71
DDX55-203ENST00000421670 ZNF219Q9P2Y4 722 aaPredicted RBP19.5■□□□□ 0.71
DDX55-203ENST00000421670 ATG9AQ7Z3C6 839 aa19.49■□□□□ 0.71
DDX55-203ENST00000421670 BSDC1Q9NW68 430 aaPredicted RBP19.49■□□□□ 0.71
DDX55-203ENST00000421670 EYA2O00167 538 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms