RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ZPBPQ9BS86 351 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 FUNDC2Q9BWH2 189 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 VN1R1Q9GZP7 353 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 AMBNQ9NP70 447 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 MKL2Q9ULH7 1088 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 SH3D21A4FU49 640 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 H3BN98 237 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 PEX12O00623 359 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 SOX30O94993 753 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 CDK1P06493 297 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 NID1P14543 1247 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 SNRPGP62308 76 aaKnown RBP20.9■□□□□ 0.94
CDX1-201ENST00000231656 CCDC81Q6ZN84 652 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 SLC16A12Q6ZSM3 486 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 GDF7Q7Z4P5 450 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 MYDGFQ969H8 173 aa20.9■□□□□ 0.94
CDX1-201ENST00000231656 WARS2Q9UGM6 360 aaKnown RBP20.9■□□□□ 0.94
CDX1-201ENST00000231656 HEMK1Q9Y5R4 338 aaPredicted RBP20.9■□□□□ 0.94
CDX1-201ENST00000231656 NPIPA5A0A0B4J1W7 369 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 NPIPA7E9PJI5 369 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 MAN1A2O60476 641 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 KCNK2O95069 426 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 IFNA16P05015 189 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 KLK3P07288 261 aaPredicted RBP20.89■□□□□ 0.93
CDX1-201ENST00000231656 NPIPA8P0DM63 369 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 GSTM3P21266 225 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 SSTR4P31391 388 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 IFNA8P32881 189 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 FOXL2P58012 376 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 PSG6Q00889 435 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 DECR1Q16698 335 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 SHISA6Q6ZSJ9 500 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 PRICKLE2Q7Z3G6 844 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 ZAR1Q86SH2 424 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 GNPDA2Q8TDQ7 276 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 SLC41A3Q96GZ6 507 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 VSTM2LQ96N03 204 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 PELOQ9BRX2 385 aaKnown RBP20.89■□□□□ 0.93
CDX1-201ENST00000231656 DDA1Q9BW61 102 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 SLC26A1Q9H2B4 701 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 GPN2Q9H9Y4 310 aaPredicted RBP20.89■□□□□ 0.93
CDX1-201ENST00000231656 C14orf105Q9NVL8 296 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 GPR83Q9NYM4 423 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 ENPP5Q9UJA9 477 aa20.89■□□□□ 0.93
CDX1-201ENST00000231656 A0A1W2PPW3 197 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 VSTM2BA6NLU5 285 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 NTN1O95631 604 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 GUSBP08236 651 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 TNNI3P19429 210 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 GALNSP34059 522 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 IFNGR2P38484 337 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 MRPL2Q5T653 305 aaKnown RBP20.88■□□□□ 0.93
CDX1-201ENST00000231656 UBE2UQ5VVX9 321 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 ANKRD13BQ86YJ7 626 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 NKAIN4Q8IVV8 208 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 WDR36Q8NI36 951 aaKnown RBP20.88■□□□□ 0.93
CDX1-201ENST00000231656 ACOT11Q8WXI4 607 aaPredicted RBP20.88■□□□□ 0.93
CDX1-201ENST00000231656 YIPF6Q96EC8 236 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 DCUN1D5Q9BTE7 237 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 CLN6Q9NWW5 311 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 SELENONQ9NZV5 590 aa20.88■□□□□ 0.93
CDX1-201ENST00000231656 TEX51A0A1B0GUA7 166 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 TCRBV16S1A1N1A0A5B0 115 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 CDHR4A6H8M9 788 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 CNOT3O75175 753 aaKnown RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 CEACAM1P13688 526 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 CCNA2P20248 432 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 C21orf33P30042 268 aaPredicted RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 NSDHLQ15738 373 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 C3orf38Q5JPI3 329 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 TMEM201Q5SNT2 666 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 MRPL14Q6P1L8 145 aaKnown RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 FAM199XQ6PEV8 388 aaPredicted RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 ZNF730Q6ZMV8 503 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 ZNF517Q6ZMY9 492 aaPredicted RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 KIF18BQ86Y91 864 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 TMEM151BQ8IW70 566 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 PLPP5Q8NEB5 264 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 TOR1AIP2Q8NFQ8 470 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 STK17BO94768 372 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 PRG2P13727 222 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 OMPP47874 163 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 PLAURQ03405 335 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 ZNF267Q14586 743 aaPredicted RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 TBCEQ15813 527 aaPredicted RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 MEX3DQ86XN8 651 aaKnown RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 GALNT6Q8NCL4 622 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 C7orf57Q8NEG2 295 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 B3GNT7Q8NFL0 401 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 TRUB1Q8WWH5 349 aaKnown RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 MR1Q95460 341 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 POLR2J2Q9GZM3 115 aaKnown RBP20.87■□□□□ 0.93
CDX1-201ENST00000231656 SLC25A19Q9HC21 320 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 DTX4Q9Y2E6 619 aa20.87■□□□□ 0.93
CDX1-201ENST00000231656 C9orf172C9J069 976 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 LCKP06239 509 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 HTR2AP28223 471 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 FUT7Q11130 342 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 NFATC3Q12968 1075 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 TSPAN31Q12999 210 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms