RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 PACS2Q86VP3 889 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 SPTLC3Q9NUV7 552 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 TOP1P11387 765 aaKnown RBP13.46□□□□□ -0.25
SNIP1-201ENST00000296215 LACTBP83111 547 aaPredicted RBP13.46□□□□□ -0.25
SNIP1-201ENST00000296215 NUCB1Q02818 461 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 CCDC158Q5M9N0 1113 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 CWC27Q6UX04 472 aaKnown RBP13.46□□□□□ -0.25
SNIP1-201ENST00000296215 RBM42Q9BTD8 480 aaKnown RBP13.46□□□□□ -0.25
SNIP1-201ENST00000296215 VCX3BQ9H321 246 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 VCX3AQ9NNX9 186 aa13.46□□□□□ -0.25
SNIP1-201ENST00000296215 PUF60Q9UHX1 559 aaKnown RBP13.46□□□□□ -0.25
SNIP1-201ENST00000296215 ABTB1Q969K4 478 aaPredicted RBP13.46□□□□□ -0.26
SNIP1-201ENST00000296215 DDX19AQ9NUU7 478 aaKnown RBP13.46□□□□□ -0.26
SNIP1-201ENST00000296215 EPB41L2O43491 1005 aaKnown RBP13.45□□□□□ -0.26
SNIP1-201ENST00000296215 ACTN3Q08043 901 aaPredicted RBP13.45□□□□□ -0.26
SNIP1-201ENST00000296215 BRD3Q15059 726 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 ZSCAN25Q6NSZ9 544 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 ANKS4BQ8N8V4 417 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 FAM71BQ8TC56 605 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 UBAP1Q9NZ09 502 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 ST20-MTHFSA0A0A6YYL1 179 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 TRIM21P19474 475 aaKnown RBP13.45□□□□□ -0.26
SNIP1-201ENST00000296215 FAM160A1Q05DH4 1040 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 DAAM2Q86T65 1068 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 GBP5Q96PP8 586 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 UIMC1Q96RL1 719 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 OSBPL9Q96SU4 736 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 TAOK3Q9H2K8 898 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 ZKSCAN1P17029 563 aaPredicted RBP13.45□□□□□ -0.26
SNIP1-201ENST00000296215 MAP7Q14244 749 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 TRIM68Q6AZZ1 485 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 CECR2Q9BXF3 1484 aa13.45□□□□□ -0.26
SNIP1-201ENST00000296215 ST5P78524 1137 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 TRIM74Q86UV6 250 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 TRIM73Q86UV7 250 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 FAN1Q9Y2M0 1017 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 MAFGO15525 162 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 HNRNPH1P31943 449 aaKnown RBP13.44□□□□□ -0.26
SNIP1-201ENST00000296215 CORO7P57737 925 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 FBXW10Q5XX13 1052 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 HOOK3Q86VS8 718 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 BICC1Q9H694 974 aaKnown RBP13.44□□□□□ -0.26
SNIP1-201ENST00000296215 CTIFO43310 598 aaKnown RBP13.44□□□□□ -0.26
SNIP1-201ENST00000296215 U2AF1L5P0DN76 240 aaPredicted RBP13.44□□□□□ -0.26
SNIP1-201ENST00000296215 U2AF1Q01081 240 aaKnown RBP eCLIP13.44□□□□□ -0.26
SNIP1-201ENST00000296215 MIEF2Q96C03 454 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 FAM204AQ9H8W3 233 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 FRMD4BQ9Y2L6 1034 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 FAM169AQ9Y6X4 670 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 USP47Q96K76 1375 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 EFCAB8A8MWE9 144 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 IFFO1Q0D2I5 559 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 DYNC1I2Q13409 638 aaKnown RBP13.44□□□□□ -0.26
SNIP1-201ENST00000296215 RASIP1Q5U651 963 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 KIAA0825Q8IV33 1275 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 TRIM42Q8IWZ5 723 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 TRIML1Q8N9V2 468 aa13.44□□□□□ -0.26
SNIP1-201ENST00000296215 ARID3CA6NKF2 412 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 WDHD1O75717 1129 aaPredicted RBP13.43□□□□□ -0.26
SNIP1-201ENST00000296215 TYRO3Q06418 890 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 ADCY2Q08462 1091 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 CUL3Q13618 768 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 CCDC40Q4G0X9 1142 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 SMARCC2Q8TAQ2 1214 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 BATF3Q9NR55 127 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 TSNAXIP1Q2TAA8 658 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 CCDC57Q2TAC2 916 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 CPLX4Q7Z7G2 160 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 PROCA1Q8NCQ7 364 aaPredicted RBP13.43□□□□□ -0.26
SNIP1-201ENST00000296215 GCC1Q96CN9 775 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 SEC62Q99442 399 aaKnown RBP13.43□□□□□ -0.26
SNIP1-201ENST00000296215 ATP11AP98196 1134 aa13.43□□□□□ -0.26
SNIP1-201ENST00000296215 LARP1BQ659C4 914 aaKnown RBP13.43□□□□□ -0.26
SNIP1-201ENST00000296215 PPP1R12BO60237 982 aaPredicted RBP13.42□□□□□ -0.26
SNIP1-201ENST00000296215 DNAJC8O75937 253 aaPredicted RBP13.42□□□□□ -0.26
SNIP1-201ENST00000296215 GNGT1P63211 74 aa13.42□□□□□ -0.26
SNIP1-201ENST00000296215 SWT1Q5T5J6 900 aaKnown RBP13.42□□□□□ -0.26
SNIP1-201ENST00000296215 DTNBP1Q96EV8 351 aa13.42□□□□□ -0.26
SNIP1-201ENST00000296215 PCMTD1Q96MG8 357 aaPredicted RBP13.42□□□□□ -0.26
SNIP1-201ENST00000296215 MVPQ14764 893 aaKnown RBP13.42□□□□□ -0.26
SNIP1-201ENST00000296215 BICD1Q96G01 975 aa13.42□□□□□ -0.26
SNIP1-201ENST00000296215 KDM4CQ9H3R0 1056 aa13.42□□□□□ -0.26
SNIP1-201ENST00000296215 USH1CQ9Y6N9 552 aa13.42□□□□□ -0.26
SNIP1-201ENST00000296215 EIF4G1Q04637 1599 aaKnown RBP13.42□□□□□ -0.26
SNIP1-201ENST00000296215 B4GALNT2Q8NHY0 566 aa13.42□□□□□ -0.26
SNIP1-201ENST00000296215 BAG1Q99933 345 aaPredicted RBP13.42□□□□□ -0.26
SNIP1-201ENST00000296215 FMN1Q68DA7 1419 aa13.42□□□□□ -0.26
SNIP1-201ENST00000296215 CHMP4BP1P59074 171 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 CCDC47Q96A33 483 aaKnown RBP13.41□□□□□ -0.26
SNIP1-201ENST00000296215 ZC3H6P61129 1189 aaKnown RBP13.41□□□□□ -0.26
SNIP1-201ENST00000296215 ARFGAP2Q8N6H7 521 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 PPFIA2O75334 1257 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 PIP4K2BP78356 416 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 MAATS1Q7Z4T9 603 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 THOC1Q96FV9 657 aaKnown RBP13.41□□□□□ -0.26
SNIP1-201ENST00000296215 SPAG5Q96R06 1193 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 ZFXP17010 805 aaPredicted RBP13.41□□□□□ -0.26
SNIP1-201ENST00000296215 MORC4Q8TE76 937 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 USP6NLQ92738 828 aa13.41□□□□□ -0.26
SNIP1-201ENST00000296215 SYTL4Q96C24 671 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms