RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 DCDC1P59894 354 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 SNRPEP62304 92 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 CDK3Q00526 305 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 SEMG2Q02383 582 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZFP36L1Q07352 338 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 EPS8Q12929 822 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 PRKAA1Q13131 559 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 EIF3IQ13347 325 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 XRCC4Q13426 336 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 C1orf61Q13536 156 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TFDP2Q14188 446 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 RBM39Q14498 530 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 PDK1Q15118 436 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 C14orf28Q4W4Y0 310 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 FAM98BQ52LJ0 330 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TEX44Q53QW1 395 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TFDP3Q5H9I0 405 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 OTUD3Q5T2D3 398 aaPredicted RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 GCNT6Q5T4J0 391 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 HENMT1Q5T8I9 393 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 LRRC66Q68CR7 880 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 PDPK2PQ6A1A2 396 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 C11orf63Q6NUN7 778 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 GUSBP11Q6P575 273 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 KLC3Q6P597 504 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 MFSD7Q6UXD7 560 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 CEACAM20Q6UY09 585 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 KDM7AQ6ZMT4 941 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 EFL1Q7Z2Z2 1120 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 HSD11B1LQ7Z5J1 315 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 NT5DC3Q86UY8 548 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 KATNAL2Q8IYT4 538 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 RCOR2Q8IZ40 523 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TAGAPQ8N103 731 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 STPG4Q8N801 248 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 L3MBTL4Q8NA19 623 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 CCNYQ8ND76 341 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 OR10V1Q8NGI7 309 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 EXD1Q8NHP7 514 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 KIAA1524Q8TCG1 905 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 MAPK15Q8TD08 544 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 PDCD6IPQ8WUM4 868 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 SNRNP27Q8WVK2 155 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 FCAMRQ8WWV6 532 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 OR1E3Q8WZA6 343 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TM9SF4Q92544 642 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 FGF11Q92914 225 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TMEM159Q96B96 161 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 AP2M1Q96CW1 435 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 IMP4Q96G21 291 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 PDXPQ96GD0 296 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 RBM41Q96IZ5 413 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNF582Q96NG8 517 aaPredicted RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 VAT1Q99536 393 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 LGMNQ99538 433 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 C19orf43Q9BQ61 176 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 MLPHQ9BV36 600 aaPredicted RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 ABCG4Q9H172 646 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 SLC25A51Q9H1U9 297 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 ABCG8Q9H221 673 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 KCNK15Q9H427 330 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 OSGEPL1Q9H4B0 414 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 HHATLQ9HCP6 504 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 CHMP1AQ9HD42 196 aaPredicted RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 ASCL3Q9NQ33 180 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 NPAP1Q9NZP6 1156 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 VPS18Q9P253 973 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 ACAD8Q9UKU7 415 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 GAB2Q9UQC2 676 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 CHKBQ9Y259 395 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 TLN1Q9Y490 2541 aaKnown RBP3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 PIEZO2Q9H5I5 2752 aa3.29□□□□□ -1.88
CKS1BP3-201ENST00000600888 CFAP46Q8IYW2 2715 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 SPTBP11277 2137 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 hCG_1818297A0A087WSY0 165 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 A0A1W2PNU3 283 aaPredicted RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 OR5K4A6NMS3 321 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 A8MX80 341 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 SMIM1B2RUZ4 78 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 D6RAR5 112 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 APOC4-APOC2K7ER74 178 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 KCNK1O00180 336 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CHUKO15111 745 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 RRP8O43159 456 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZW10O43264 779 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 SPOPO43791 374 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 VEGFDO43915 354 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CST8O60676 142 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CSO75390 466 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 JCHAINP01591 159 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 APOC2P02655 101 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 FGF1P05230 155 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 H1F0P07305 194 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 INHBAP08476 426 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PTPN3P26045 913 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CTNNA2P26232 953 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CTNNA1P35221 906 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 HMGCLP35914 325 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms