RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MAGED4Q96JG8 741 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 STACQ99469 402 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 TACO1Q9BSH4 297 aaKnown RBP10.89□□□□□ -0.67
VPS52-213ENST00000461743 DOHHQ9BU89 302 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 ANGPTL4Q9BY76 406 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 ZNF703Q9H7S9 590 aaPredicted RBP10.89□□□□□ -0.67
VPS52-213ENST00000461743 ANKRA2Q9H9E1 313 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 ZFP64Q9NPA5 681 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 PLSCR2Q9NRY7 297 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 SIRT3Q9NTG7 399 aaPredicted RBP10.89□□□□□ -0.67
VPS52-213ENST00000461743 ZCCHC3Q9NUD5 404 aaKnown RBP10.89□□□□□ -0.67
VPS52-213ENST00000461743 GIN1Q9NXP7 522 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 ZIM2Q9NZV7 527 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 CBLCQ9ULV8 474 aa10.89□□□□□ -0.67
VPS52-213ENST00000461743 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.89□□□□□ -0.67
VPS52-213ENST00000461743 CACNA1CQ13936 2221 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 PRAMEF25A6NGN4 478 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 ASNA1O43681 348 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 HS6ST1O60243 411 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 UGT2B11O75310 529 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 TRIM3O75382 744 aaPredicted RBP10.88□□□□□ -0.67
VPS52-213ENST00000461743 NKX2-2O95096 273 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 UNC5CO95185 931 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 KCNH1O95259 989 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 STSP08842 583 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 DNASE1L1P49184 302 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 SLC9B1Q4ZJI4 515 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 C4orf17Q53FE4 359 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 RNFT1Q5M7Z0 435 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 EXOSC6Q5RKV6 272 aaKnown RBP10.88□□□□□ -0.67
VPS52-213ENST00000461743 PRAMEF20Q5VT98 475 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 TMEM198Q66K66 360 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 ARHGAP11AQ6P4F7 1023 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 Q6ZPB1 254 aaPredicted RBP10.88□□□□□ -0.67
VPS52-213ENST00000461743 MSANTD1Q6ZTZ1 278 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 SZRD1Q7Z422 152 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 PRR22Q8IZ63 422 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 GIMAP5Q96F15 307 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 RILPQ96NA2 401 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 ZBTB18Q99592 522 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 CCDC28BQ9BUN5 200 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 OSBPL11Q9BXB4 747 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 WDR55Q9H6Y2 383 aaPredicted RBP10.88□□□□□ -0.67
VPS52-213ENST00000461743 METTL7AQ9H8H3 244 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 PROK2Q9HC23 129 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 SLCO1B3Q9NPD5 702 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 TCF7L2Q9NQB0 619 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 DUSP22Q9NRW4 184 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 TUBA8Q9NY65 449 aaPredicted RBP10.88□□□□□ -0.67
VPS52-213ENST00000461743 GPR45Q9Y5Y3 372 aa10.88□□□□□ -0.67
VPS52-213ENST00000461743 PCNX3Q9H6A9 2034 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 COL12A1Q99715 3063 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 GOLGA8QA0A0J9YX86 632 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 PINLYPA6NC86 204 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 GOLGA8OA6NCC3 632 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 LRRC3CA6NJW4 275 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 NPIPA5E9PKD4 350 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 GOLGA8NF8WBI6 632 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 UBDO15205 165 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 DIAPH2O60879 1101 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 REM1O75628 298 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 IL33O95760 270 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 C6orf47O95873 294 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 IGHG3P01860 377 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 PIGAP37287 484 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 CASP3P42574 277 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 CCT3P49368 545 aaKnown RBP10.87□□□□□ -0.67
VPS52-213ENST00000461743 CASP6P55212 293 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 PER3P56645 1201 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 PPIAP62937 165 aaKnown RBP10.87□□□□□ -0.67
VPS52-213ENST00000461743 TXNL4AP83876 142 aaKnown RBP10.87□□□□□ -0.67
VPS52-213ENST00000461743 PGS1Q32NB8 556 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 CMPK2Q5EBM0 449 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 NXNQ6DKJ4 435 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 OR4F3Q6IEY1 312 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 CDC73Q6P1J9 531 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 MTFR2Q6P444 385 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 EID3Q8N140 333 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 OR5M3Q8NGP4 307 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 CXorf36Q9H7Y0 433 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 EQTNQ9NQ60 294 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 SDR39U1Q9NRG7 319 aaPredicted RBP10.87□□□□□ -0.67
VPS52-213ENST00000461743 TMEM45AQ9NWC5 275 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 KLRF1Q9NZS2 232 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 BTNL2Q9UIR0 455 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 PCDHGB4Q9UN71 923 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 NPIPA1Q9UND3 350 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 SLC5A6Q9Y289 635 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 ZNF835Q9Y2P0 537 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 PCDHGB3Q9Y5G1 929 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 WIF1Q9Y5W5 379 aa10.87□□□□□ -0.67
VPS52-213ENST00000461743 A0A1B0GUH1 482 aa10.86□□□□□ -0.67
VPS52-213ENST00000461743 PRSS51A0A1B0GVH4 220 aa10.86□□□□□ -0.67
VPS52-213ENST00000461743 OR14I1A6ND48 311 aa10.86□□□□□ -0.67
VPS52-213ENST00000461743 G3V3Y1 287 aa10.86□□□□□ -0.67
VPS52-213ENST00000461743 SNPHO15079 494 aa10.86□□□□□ -0.67
VPS52-213ENST00000461743 CFLARO15519 480 aa10.86□□□□□ -0.67
VPS52-213ENST00000461743 SUSD5O60279 629 aa10.86□□□□□ -0.67
VPS52-213ENST00000461743 HCN1O60741 890 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms