RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NSFL1CQ9UNZ2 370 aaKnown RBP19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 LMO7Q8WWI1 1683 aa19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 HOXB7P09629 217 aa19.52■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 RBSNQ9H1K0 784 aa19.52■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 CHPF2Q9P2E5 772 aa19.52■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 COL18A1P39060 1754 aa19.52■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 COL22A1Q8NFW1 1626 aaPredicted RBP19.52■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 HSPA4P34932 840 aa19.52■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 FOXD4L5Q5VV16 416 aaPredicted RBP19.52■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 FOXD4L4Q8WXT5 416 aaPredicted RBP19.52■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 LARP1Q6PKG0 1096 aaKnown RBP19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 NLRP2Q9NX02 1062 aa19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 TMEM63CQ9P1W3 806 aa19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 SRGAP3O43295 1099 aa19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 MAP4K4O95819 1239 aaPredicted RBP19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 PRIM1P49642 420 aaKnown RBP19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 HSP90AA2PQ14568 343 aaPredicted RBP19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 FBXO41Q8TF61 875 aa19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 DNAAF4Q8WXU2 420 aa19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 UPF3BQ9BZI7 483 aaKnown RBP19.51■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 PI4KAP2A4QPH2 592 aa19.5■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 MEX3CQ5U5Q3 659 aaKnown RBP19.5■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 NOL8Q76FK4 1167 aaKnown RBP19.5■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 PI4KAP1Q8N8J0 262 aa19.5■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 KIF1BPQ96EK5 621 aa19.49■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 NGLY1Q96IV0 654 aa19.49■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 ERBB3P21860 1342 aa19.49■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 ADCY9O60503 1353 aa19.49■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 SGSM2O43147 1006 aa19.48■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 EVA1CP58658 441 aa19.48■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 NAP1L5Q96NT1 182 aaPredicted RBP19.48■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 ANXA1P04083 346 aa19.48■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 TOM1L2Q6ZVM7 507 aa19.47■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 CPDO75976 1380 aa19.47■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 AKAP4Q5JQC9 854 aa19.47■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 LSG1Q9H089 658 aaKnown RBP19.47■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 RAD50Q92878 1312 aa19.46■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 USP42Q9H9J4 1324 aaKnown RBP19.46■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 LRSAM1Q6UWE0 723 aa19.46■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 ANP32BQ92688 251 aaKnown RBP19.46■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 CCDC9Q9Y3X0 531 aaKnown RBP19.46■□□□□ 0.71
MSH5-SAPCD1-208ENST00000498473 BTBD11A6QL63 1104 aa19.45■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 ZNF530Q6P9A1 599 aaPredicted RBP19.45■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 SNX14Q9Y5W7 946 aa19.45■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 PLCH1Q4KWH8 1693 aa19.45■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 MPRIPQ6WCQ1 1025 aa19.45■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 PDLIM2Q96JY6 352 aa19.45■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 COL5A2P05997 1499 aaPredicted RBP19.45■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 MBD3O95983 291 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 SYCE3A1L190 88 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 TEFQ10587 303 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 MTX1Q13505 466 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 ZSCAN30Q86W11 494 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 CNTROBQ8N137 903 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 TTC14Q96N46 770 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 CHMP4AQ9BY43 222 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 NCAPD2Q15021 1401 aa19.44■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 RNMTO43148 476 aaKnown RBP19.43■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 PLEKHO1Q53GL0 409 aaPredicted RBP19.43■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 RASEFQ8IZ41 740 aa19.43■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 HSP90AB4PQ58FF6 505 aa19.43■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 ILDR1Q86SU0 546 aaPredicted RBP19.43■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 TCHHQ07283 1943 aa19.42■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 HEG1Q9ULI3 1381 aa19.42■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 RPAP1Q9BWH6 1393 aaPredicted RBP19.42■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 TTC41PQ6P2S7 1318 aa19.42■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 PROSER3Q2NL68 480 aa19.41■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 DBF4Q9UBU7 674 aaPredicted RBP19.41■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 SPATA31A6Q5VVP1 1343 aa19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 MAP3K2Q9Y2U5 619 aa19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 COL14A1Q05707 1796 aaKnown RBP19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 GIGYF1O75420 1035 aaPredicted RBP19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 ALDH1L1O75891 902 aa19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 AMOTQ4VCS5 1084 aa19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 HS1BP3Q53T59 392 aa19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 CWC27Q6UX04 472 aaKnown RBP19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 SIPA1L3O60292 1781 aaPredicted RBP19.4■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 KAT6BQ8WYB5 2073 aa19.39■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 AFF2P51816 1311 aa19.39■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 WDR17Q8IZU2 1322 aa19.39■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 WDR33Q9C0J8 1336 aaKnown RBP19.39■□□□□ 0.7
MSH5-SAPCD1-208ENST00000498473 GLRX3O76003 335 aaKnown RBP19.39■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 AK2P54819 239 aa19.39■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 SPG7Q9UQ90 795 aa19.39■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 OVOS2A0A0G2JMS6 1433 aa19.39■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 GADD45BO75293 160 aaPredicted RBP19.39■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 RUFY3Q7L099 469 aa19.39■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 USP21Q9UK80 565 aa19.39■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 PRAMEF22A3QJZ6 481 aa19.38■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 KSR2Q6VAB6 950 aa19.38■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 OS9Q13438 667 aaPredicted RBP19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 USP48Q86UV5 1035 aa19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 GDPD2Q9HCC8 539 aa19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 FOXD4L6Q3SYB3 417 aaPredicted RBP19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 FOXD4L3Q6VB84 417 aaPredicted RBP19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 PA2G4Q9UQ80 394 aaKnown RBP19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 BCL9LQ86UU0 1499 aa19.37■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 CWF19L2Q2TBE0 894 aaKnown RBP19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 C1orf141Q5JVX7 400 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms