RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ZNF717Q9BY31 904 aaPredicted RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 AHSPQ9NZD4 102 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 ASB4Q9Y574 426 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 A0A1B0GTH9 108 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 OR7A17O14581 309 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 CLDN14O95500 239 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 FAM58BPP0C7Q3 252 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 ARL1P40616 181 aaPredicted RBP17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 HSF1Q00613 529 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 SPRED3Q2MJR0 410 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 FRG2Q64ET8 278 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 C18orf63Q68DL7 685 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 FGD2Q7Z6J4 655 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 OR2M7Q8NG81 312 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 SLC22A8Q8TCC7 542 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 FRG2BQ96QU4 278 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 DMRTA2Q96SC8 542 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 SACM1LQ9NTJ5 587 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 DEPPQ9NTK1 212 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 ZNF358Q9NW07 568 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 ADAM29Q9UKF5 820 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 PCTPQ9UKL6 214 aa17.66■□□□□ 0.42
CCDC28A-203ENST00000617445 APCP25054 2843 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 IQANK1A0A1B0GTG1 560 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 EEDO75530 441 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 SNRPAP09012 282 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 NR2F6P10588 404 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 ECHS1P30084 290 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 RFC3P40938 356 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 PPIAP62937 165 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 PLGLB1Q02325 96 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 GGTA1PQ4G0N0 100 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 TMEM211Q6ICI0 200 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 PAGE2Q7Z2X7 111 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 LURAP1LQ8IV03 231 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 MYRIPQ8NFW9 859 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 DCAKDQ8WVC6 231 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 MTFMTQ96DP5 389 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 MRPL46Q9H2W6 279 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 ZDHHC11Q9H8X9 412 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 XPR1Q9UBH6 696 aa17.65■□□□□ 0.42
CCDC28A-203ENST00000617445 A0A1W2PR48 441 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 OR6C76A6NM76 312 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 ENO4A6NNW6 628 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 TRIM49D1C9J1S8 452 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 POC1B-GALNT4F8VUJ3 575 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 ADAM10O14672 748 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 TMPRSS11DO60235 418 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 OR10H2O60403 315 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 CDC40O60508 579 aaKnown RBP eCLIP17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 P04436 131 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 SLC35E2P0CK97 266 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 GRNP28799 593 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 NEK2P51955 445 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 IFT88Q13099 833 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 ZNF750Q32MQ0 723 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 UBAP2Q5T6F2 1119 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 TTC19Q6DKK2 380 aaPredicted RBP17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 SLC29A4Q7RTT9 530 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 MILR1Q7Z6M3 343 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 LCA5Q86VQ0 697 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 OR52B6Q8NGF0 335 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 OR52N2Q8NGI0 321 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 KIF18AQ8NI77 898 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 RIT1Q92963 219 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 PPWD1Q96BP3 646 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 MTBPQ96DY7 904 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 TP63Q9H3D4 680 aaPredicted RBP17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 IL1RL2Q9HB29 575 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 COQ3Q9NZJ6 369 aa17.64■□□□□ 0.41
CCDC28A-203ENST00000617445 GUCY1B2O75343 617 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 GLSO94925 669 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 OTCP00480 354 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 TPOP07202 933 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 ABHD2P08910 425 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 COX6B1P14854 86 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 ASPHQ12797 758 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 HYAL4Q2M3T9 481 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 ZNF791Q3KP31 576 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 SLC22A10Q63ZE4 541 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 OR52E8Q6IFG1 317 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 RNF111Q6ZNA4 994 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 TIFABQ6ZNK6 161 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 FAM47EQ6ZV65 393 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 TRMT10CQ7L0Y3 403 aaKnown RBP17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 MCEMP1Q8IX19 187 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 C9orf40Q8IXQ3 194 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 CEP112Q8N8E3 955 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 TRPC4APQ8TEL6 797 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 CDK15Q96Q40 435 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 CNPPD1Q9BV87 410 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 C1QTNF3Q9BXJ4 246 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 TTTY12Q9BZ98 90 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 ELOVL6Q9H5J4 265 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 ZBTB26Q9HCK0 441 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 NMRK1Q9NWW6 199 aa17.63■□□□□ 0.41
CCDC28A-203ENST00000617445 EXOC1LA0A1B0GW35 172 aa17.62■□□□□ 0.41
CCDC28A-203ENST00000617445 PINLYPA6NC86 204 aa17.62■□□□□ 0.41
CCDC28A-203ENST00000617445 OR14I1A6ND48 311 aa17.62■□□□□ 0.41
CCDC28A-203ENST00000617445 AIFM1O95831 613 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms