RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 CAB39LQ9H9S4 337 aa16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 TRMT1Q9NXH9 659 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 TUBA8Q9NY65 449 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 OPTCQ9UBM4 332 aa16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 FOXD3Q9UJU5 478 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 SNX24Q9Y343 169 aa16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 PCDHGA11Q9Y5H2 935 aa16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 FAM215AQ9Y5M1 114 aa16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 IKBKGQ9Y6K9 419 aa16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 HCFC1P51610 2035 aa16.44■□□□□ 0.22
SHKBP1-227ENST00000602011 PRRC2AP48634 2157 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 A0A0G2JNJ9 132 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 FAM159BA6NKW6 160 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 SYT5O00445 386 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 PHGDHO43175 533 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 TGFB1P01137 390 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 CCL3P10147 92 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 ALOX15P16050 662 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 EPORP19235 508 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 DNAJA1P31689 397 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 RPL21P46778 160 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 DNASE1L1P49184 302 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 RAP1GDS1P52306 607 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 KCNJ2P63252 427 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 SPRED3Q2MJR0 410 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 RTL6Q6ICC9 239 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 GRHL2Q6ISB3 625 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 ARSKQ6UWY0 536 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 TBC1D1Q86TI0 1168 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 ISCA2Q86U28 154 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 TAGAPQ8N103 731 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 LRRC25Q8N386 305 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 ZNF321PQ8N8H1 164 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 UBTD2Q8WUN7 234 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 NAPGQ99747 312 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 ERP44Q9BS26 406 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 WDR41Q9HAD4 459 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 SMYD2Q9NRG4 433 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 Q9UFV3 132 aa16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 ZNF469Q96JG9 3925 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-227ENST00000602011 AKAP6Q13023 2319 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 A0A0G2JMM0 328 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 A0A1W2PPB8 328 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 A0A1W2PRS3 328 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 TCRBV9S1A1TA0A576 114 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 KIR3DP1A8MWS1 328 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 G3V3Y1 287 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 TP53I11O14683 189 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 UGDHO60701 494 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 KERAO60938 352 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 GPR75O95800 540 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 FBXO45P0C2W1 286 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 PCNAP12004 261 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 SSTR1P30872 391 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 GNG11P61952 73 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 CAV1Q03135 178 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 NAB1Q13506 487 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 ADNP2Q6IQ32 1131 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 METTL2BQ6P1Q9 378 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 RAPH1Q70E73 1250 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 LIX1Q8N485 282 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 RHEBL1Q8TAI7 183 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 NEIL3Q8TAT5 605 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 TP53INP1Q96A56 240 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 SECISBP2Q96T21 854 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 CXXC4Q9H2H0 198 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 SAYSD1Q9NPB0 183 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 LYARQ9NX58 379 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 DNAJB12Q9NXW2 375 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 ALKBH4Q9NXW9 302 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 L3MBTL1Q9Y468 752 aa16.42■□□□□ 0.22
SHKBP1-227ENST00000602011 MAP1AP78559 2803 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 CXorf49A8MYA2 514 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 RTCAO00442 366 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 DVL2O14641 736 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 PROM1O43490 865 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 FGF17O60258 216 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 ZNF354AO60765 605 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 CDH16O75309 829 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 CTAG2O75638 210 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 SNX4O95219 450 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 C1QAP02745 245 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 LTA4HP09960 611 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 KIR2DL3P43628 341 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 RPP38P78345 283 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 TNFRSF17Q02223 184 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 CUL3Q13618 768 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 TMEM198Q66K66 360 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 RNF111Q6ZNA4 994 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 C9orf40Q8IXQ3 194 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 PM20D2Q8IYS1 436 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 SREK1Q8WXA9 508 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 RIT1Q92963 219 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 ALG9Q9H6U8 611 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 ZNF703Q9H7S9 590 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 ZNF629Q9UEG4 869 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 ANGPTL3Q9Y5C1 460 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 LIPGQ9Y5X9 500 aa16.41■□□□□ 0.22
SHKBP1-227ENST00000602011 NIPBLQ6KC79 2804 aaeCLIP16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 ANKHD1Q8IWZ3 2542 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms