RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PLPP5Q8NEB5 264 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 CATSPER1Q8NEC5 780 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 ZCCHC10Q8TBK6 192 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 NT5CQ8TCD5 201 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 PYROXD1Q8WU10 500 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 NEIL2Q969S2 332 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 ERP44Q9BS26 406 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 PELI2Q9HAT8 420 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 HCN3Q9P1Z3 774 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 PYCARDQ9ULZ3 195 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 SNX24Q9Y343 169 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 NAALAD2Q9Y3Q0 740 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 NDUFS4O43181 175 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 JRKO75564 520 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 ITGAMP11215 1152 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 ALOX12P18054 663 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 SAT1P21673 171 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 SCTRP47872 440 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 PGGT1BP53609 377 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 SLC12A2P55011 1212 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 TAS2R39P59534 338 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 SNRPNP63162 240 aaKnown RBP18■□□□□ 0.47
CCDC28A-203ENST00000617445 POU4F1Q01851 419 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 FASTKD3Q14CZ7 662 aaKnown RBP18■□□□□ 0.47
CCDC28A-203ENST00000617445 ABHD17BQ5VST6 288 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 ABHD13Q7L211 337 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 THOC6Q86W42 341 aaKnown RBP18■□□□□ 0.47
CCDC28A-203ENST00000617445 PDSS2Q86YH6 399 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 TRPV3Q8NET8 790 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 CDKL2Q92772 493 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 AIF1LQ9BQI0 150 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 PLEKHB1Q9UF11 243 aaPredicted RBP18■□□□□ 0.47
CCDC28A-203ENST00000617445 OARD1Q9Y530 152 aa18■□□□□ 0.47
CCDC28A-203ENST00000617445 GALR3O60755 368 aaPredicted RBP17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 RDH16O75452 317 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 EFNA3P52797 238 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 EXT1Q16394 746 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 CATSPEREQ5SY80 951 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 ANKRD37Q7Z713 158 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 ZNF740Q8NDX6 193 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 SUN3Q8TAQ9 357 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 M1APQ8TC57 530 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 TSPAN17Q96FV3 270 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 C5orf34Q96MH7 638 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 MCMBPQ9BTE3 642 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 GPAMQ9HCL2 828 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 STMN3Q9NZ72 180 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 TXNDC16Q9P2K2 825 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 CTNNAL1Q9UBT7 734 aa17.99■□□□□ 0.47
CCDC28A-203ENST00000617445 NOTCH2Q04721 2471 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 MAGEB17A8MXT2 336 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 CDC7O00311 574 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 GSTA2P09210 222 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 JAK1P23458 1154 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 REEP5Q00765 189 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 MEF2AQ02078 507 aaPredicted RBP17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 NSDHLQ15738 373 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 BTBD16Q32M84 506 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 H3F3CQ6NXT2 135 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 NXPE4Q6UWF7 544 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 FRA10AC1Q70Z53 315 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 SPATA4Q8NEY3 305 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 TBC1D20Q96BZ9 403 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 ZNF354BQ96LW1 612 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 EGFL8Q99944 293 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 CAPS2Q9BXY5 557 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 DERL2Q9GZP9 239 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 PLA2G3Q9NZ20 509 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 ERRFI1Q9UJM3 462 aaPredicted RBP17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 IKZF3Q9UKT9 509 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 SLC22A14Q9Y267 594 aa17.98■□□□□ 0.47
CCDC28A-203ENST00000617445 UNC79Q9P2D8 2635 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 NPEPPSL1A6NEC2 478 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 CDK2AP1O14519 115 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 H2AFYO75367 372 aaKnown RBP17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 SEC24DO94855 1032 aaPredicted RBP17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 WDPCPO95876 746 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 LDLRP01130 860 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 SERPIND1P05546 499 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 FHP07954 510 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 CELA2AP08217 269 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 GNAZP19086 355 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 RHAGQ02094 409 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 ACTN3Q08043 901 aaPredicted RBP17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 ABRAXAS2Q15018 415 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 C4orf17Q53FE4 359 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 CDKL4Q5MAI5 379 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 LANCL3Q6ZV70 420 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 KLHDC8AQ8IYD2 350 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 TCAIMQ8N3R3 496 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 TTLQ8NG68 377 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 DNAJB8Q8NHS0 232 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 MOCOSQ96EN8 888 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 PEX11GQ96HA9 241 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 SEC16BQ96JE7 1060 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 TSNARE1Q96NA8 513 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 LPAR4Q99677 370 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 CPNE1Q99829 537 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 SLX1AQ9BQ83 275 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms