RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CMTM5Q96DZ9 223 aa17.87■□□□□ 0.45
CLN3-206ENST00000360019 CMTM7Q96FZ5 175 aa17.87■□□□□ 0.45
CLN3-206ENST00000360019 DPH7Q9BTV6 452 aa17.87■□□□□ 0.45
CLN3-206ENST00000360019 DMRT3Q9NQL9 472 aa17.87■□□□□ 0.45
CLN3-206ENST00000360019 NOP53Q9NZM5 478 aaKnown RBP17.87■□□□□ 0.45
CLN3-206ENST00000360019 CCDC167Q9P0B6 97 aa17.87■□□□□ 0.45
CLN3-206ENST00000360019 VPS29Q9UBQ0 182 aa17.87■□□□□ 0.45
CLN3-206ENST00000360019 KLHL20Q9Y2M5 609 aa17.87■□□□□ 0.45
CLN3-206ENST00000360019 FOXE1O00358 373 aaPredicted RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 CCNDBP1O95273 360 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 G6PDP11413 515 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 UGT2B7P16662 529 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 CXCR2P25025 360 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 CMPK1P30085 196 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 ARRB1P49407 418 aaPredicted RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 GRIK2Q13002 908 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 AGKQ53H12 422 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 TRIM73Q86UV7 250 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 SNX32Q86XE0 403 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 GPR156Q8NFN8 814 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 FBXO27Q8NI29 283 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 ACTR5Q9H9F9 607 aaPredicted RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 ACTR10Q9NZ32 417 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 CSNK1G3Q9Y6M4 447 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 GSAPA4D1B5 854 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 FAM86C2PA6NEL3 165 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 SH3BGRLO75368 114 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 TBX6O95947 436 aaPredicted RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 AMD1P17707 334 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 PIK3CBP42338 1070 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 ACADVLP49748 655 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 IRX1P78414 480 aaPredicted RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 HERC3Q15034 1050 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 RPS6KA2Q15349 733 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 PDCD4Q53EL6 469 aaKnown RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 ZNF425Q6IV72 752 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 ASRGL1Q7L266 308 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 AVL9Q8NBF6 648 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 RP9Q8TA86 221 aaKnown RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 RSC1A1Q92681 617 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 TEX37Q96LM6 180 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 RHBGQ9H310 441 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 ACTL8Q9H568 366 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 NT5DC2Q9H857 520 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 TMEM184CQ9NVA4 438 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 HRASLS2Q9NWW9 162 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 ASIC5Q9NY37 505 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 DLGAP4Q9Y2H0 992 aa17.86■□□□□ 0.45
CLN3-206ENST00000360019 GOLGA4Q13439 2230 aaKnown RBP17.86■□□□□ 0.45
CLN3-206ENST00000360019 LCMT2O60294 686 aaKnown RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 HOXB3P14651 431 aaPredicted RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 HOXD12P35452 270 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 GRIA3P42263 894 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 TBL3Q12788 808 aaKnown RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 MAD2L1Q13257 205 aaPredicted RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 C14orf28Q4W4Y0 310 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 C6orf132Q5T0Z8 1188 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 CYP20A1Q6UW02 462 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 PRR23BQ6ZRT6 265 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 RINLQ6ZS11 566 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 KYQ8NBH2 561 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 C11orf24Q96F05 449 aaPredicted RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 PITHD1Q9GZP4 211 aaPredicted RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 C11orf16Q9NQ32 467 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 EIF3LQ9Y262 564 aaKnown RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 PCDHGA2Q9Y5H1 932 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 ENTPD2Q9Y5L3 495 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 KMT2EQ8IZD2 1858 aa17.85■□□□□ 0.45
CLN3-206ENST00000360019 ARID1BQ8NFD5 2236 aaPredicted RBP17.85■□□□□ 0.45
CLN3-206ENST00000360019 OR5K3A6NET4 321 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 C2orf74A8MZ97 194 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 PATE3B3GLJ2 98 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 C9JVG2 144 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 HAT1O14929 419 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 ANKRD28O15084 1053 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 HNRNPCL1O60812 293 aaKnown RBP17.84■□□□□ 0.45
CLN3-206ENST00000360019 TGFB1P01137 390 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 CFIP05156 583 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 THRAP10827 490 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 EPHA8P29322 1005 aaPredicted RBP17.84■□□□□ 0.45
CLN3-206ENST00000360019 UFM1P61960 85 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 CYP4F2P78329 520 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 CYLC2Q14093 348 aaPredicted RBP17.84■□□□□ 0.45
CLN3-206ENST00000360019 LPAL2Q16609 132 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 DUOXA1Q1HG43 343 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 ZNF438Q7Z4V0 828 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 KIF2BQ8N4N8 673 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 KLHL29Q96CT2 875 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 FCRL1Q96LA6 429 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 APOLD1Q96LR9 279 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 MRPL1Q9BYD6 325 aaKnown RBP17.84■□□□□ 0.45
CLN3-206ENST00000360019 LRMDAQ9H2I8 198 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 UCK1Q9HA47 277 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 CAPN10Q9HC96 672 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 PRM3Q9NNZ6 103 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 TMED5Q9Y3A6 229 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 A0A1B0GTQ1 180 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 TRBC2A0A5B9 178 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 B2RBV5 119 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 OR1F1O43749 312 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms