RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 OR2A1Q8NGT9 310 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 OR9A1PQ8NGU1 263 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 SERPINB12Q96P63 405 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 SMAD5Q99717 465 aaKnown RBP18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 CCDC68Q9H2F9 335 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 WDR54Q9H977 334 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 CUTCQ9NTM9 273 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 COMMD10Q9Y6G5 202 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 FAM169AQ9Y6X4 670 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 HEATR5BQ9P2D3 2071 aa18.29■□□□□ 0.52
CCDC28A-203ENST00000617445 PRRC2CQ9Y520 2896 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 TTLL8A6PVC2 850 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 PHF2O75151 1096 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 PSIP1O75475 530 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 USP1O94782 785 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 CATP04040 527 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 ERGP11308 486 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 VARSP26640 1264 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 MAGEA3P43357 314 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 ZNF470Q6ECI4 717 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 OVCH1Q7RTY7 1134 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 SMPDL3AQ92484 453 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 ZNF669Q96BR6 464 aaPredicted RBP18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 OSBPL9Q96SU4 736 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 MIPEPQ99797 713 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 SLC26A1Q9H2B4 701 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 UTP6Q9NYH9 597 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 ANKMY1Q9P2S6 941 aa18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 NXT1Q9UKK6 140 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-203ENST00000617445 ZCWPW2A0A1B0GU75 182 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 MYO1CO00159 1063 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 CMPK1P30085 196 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 CLCN7P51798 805 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 MLLT10P55197 1068 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 SOX8P57073 446 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 LONRF1Q17RB8 773 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 KLHL38Q2WGJ6 581 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 CCSMST1Q4G0I0 132 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 ACSBG2Q5FVE4 666 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 DCAF10Q5QP82 559 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 VWA5B1Q5TIE3 1220 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 PPIL6Q8IXY8 311 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 EFCAB3Q8N7B9 438 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 NAT8LQ8N9F0 302 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 FBXO15Q8NCQ5 510 aaPredicted RBP18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 GABPB2Q8TAK5 448 aaPredicted RBP18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 KCNJ9Q92806 393 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 NUDT9Q9BW91 350 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 P4HTMQ9NXG6 502 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 RUVBL2Q9Y230 463 aaKnown RBP18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 PLAAQ9Y263 795 aa18.27■□□□□ 0.52
CCDC28A-203ENST00000617445 CNTRLQ7Z7A1 2325 aa18.27■□□□□ 0.51
CCDC28A-203ENST00000617445 A0A1W2PPV9 198 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 A6NL46 340 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 GOLGA8MH3BSY2 632 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 KIF5CO60282 957 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 CTSVO60911 334 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 CNOT3O75175 753 aaKnown RBP18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 IPO13O94829 963 aaKnown RBP18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 ALPPP05187 535 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 ENO3P13929 434 aaPredicted RBP18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 UBAP2LQ14157 1087 aaKnown RBP18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 WASHC2DQ5SRD0 308 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 RNF44Q7L0R7 432 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 REXO1L1PQ8IX06 675 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 COG1Q8WTW3 980 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 VPS50Q96JG6 964 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 SIGLEC10Q96LC7 697 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 SLC22A11Q9NSA0 550 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 MAD1L1Q9Y6D9 718 aa18.26■□□□□ 0.51
CCDC28A-203ENST00000617445 OR2A25A4D2G3 310 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 ARHGEF33A8MVX0 844 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 AGPSO00116 658 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 EIF3FO00303 357 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 CCNDBP1O95273 360 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 UMODP07911 640 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 MPC1LP0DKB6 136 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 ITGAXP20702 1163 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 MMP11P24347 488 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 RPA3P35244 121 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 EMP3P54852 163 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 VSX2P58304 361 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 RELAQ04206 551 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 CTBP1Q13363 440 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 MYBPC3Q14896 1274 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 SLC9A5Q14940 896 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 NADK2Q4G0N4 442 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 COLEC12Q5KU26 742 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 JMJD6Q6NYC1 403 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 PRMT9Q6P2P2 845 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 PPP1R32Q7Z5V6 425 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 PCGF5Q86SE9 256 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 SLC35F6Q8N357 371 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 GALNT16Q8N428 558 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 GALNT11Q8NCW6 608 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 CPT1CQ8TCG5 803 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 INPP5DQ92835 1189 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 FAM136AQ96C01 138 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 FAM167BQ9BTA0 163 aa18.25■□□□□ 0.51
CCDC28A-203ENST00000617445 ATP13A2Q9NQ11 1180 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms