RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 TMEM207Q6UWW9 146 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 LIPIQ6XZB0 460 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 TAF8Q7Z7C8 310 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 C8orf59Q8N0T1 100 aaPredicted RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 TSPAN14Q8NG11 270 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 RERGQ96A58 199 aaPredicted RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 PCBD2Q9H0N5 130 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 CNOT6Q9ULM6 557 aaKnown RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 STON1Q9Y6Q2 735 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 A0A087WXM4 84 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 SORBS2O94875 1100 aaKnown RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 SCELO95171 688 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 LYNP07948 512 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 TMIGD1Q6UXZ0 262 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 PARS2Q7L3T8 475 aaKnown RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 MICU2Q8IYU8 434 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 ENDOVQ8N8Q3 282 aaKnown RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 XAGE5Q8WWM1 108 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 RHBDF1Q96CC6 855 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 TRIB3Q96RU7 358 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 NDOR1Q9UHB4 597 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 TRPS1Q9UHF7 1281 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 SH3GLB1Q9Y371 365 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 NUMA1Q14980 2115 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 G3V2T6 193 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 KMOO15229 486 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 PDYNP01213 254 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 IDH2P48735 452 aaKnown RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 RPS13P62277 151 aaKnown RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 FAM91A1Q658Y4 838 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 SMPDL3AQ92484 453 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 REXO5Q96IC2 774 aaKnown RBP13.65□□□□□ -0.22
SCAF4-202ENST00000399804 LRCH3Q96II8 777 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 IL17FQ96PD4 163 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 TRAPPC9Q96Q05 1148 aa13.65□□□□□ -0.22
SCAF4-202ENST00000399804 CYP7B1O75881 506 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 PCSK2P16519 638 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 TNNI3P19429 210 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 CCR2P41597 374 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 PCBP2Q15366 365 aaKnown RBP eCLIP13.64□□□□□ -0.235e-12■■■□□ 19.2
SCAF4-202ENST00000399804 C9orf64Q5T6V5 341 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 NANOGP8Q6NSW7 305 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 MAVSQ7Z434 540 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 KRTCAP2Q8N6L1 136 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 C11orf65Q8NCR3 313 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 ZFRQ96KR1 1074 aaKnown RBP13.64□□□□□ -0.23
SCAF4-202ENST00000399804 ZSWIM3Q96MP5 696 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 GPR78Q96P69 363 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 SLC12A9Q9BXP2 914 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 ROGDIQ9GZN7 287 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 NANOGQ9H9S0 305 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 CLIC1O00299 241 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 SLC16A8O95907 504 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 KLK1P06870 262 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 BCKDHAP12694 445 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 CMPK1P30085 196 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 CLK1P49759 484 aaKnown RBP13.64□□□□□ -0.23
SCAF4-202ENST00000399804 HEPACAMQ14CZ8 416 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 CST6Q15828 149 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 TJAP1Q5JTD0 557 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 ERICH5Q6P6B1 374 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 DCUN1D3Q8IWE4 304 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 TMEM145Q8NBT3 493 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 AHCYL2Q96HN2 611 aaKnown RBP13.64□□□□□ -0.23
SCAF4-202ENST00000399804 A0A1W2PQU0 124 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 URADA6NGE7 173 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 FAM220BPB1ANY3 271 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 H3BN98 237 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 KLF8O95600 359 aaPredicted RBP13.64□□□□□ -0.23
SCAF4-202ENST00000399804 BLOC1S3Q6QNY0 202 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 LPCAT2Q7L5N7 544 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 SLC15A3Q8IY34 581 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 ZNF655Q8N720 491 aaPredicted RBP13.64□□□□□ -0.23
SCAF4-202ENST00000399804 SLC5A11Q8WWX8 675 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 BTBD9Q96Q07 612 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 APOL4Q9BPW4 351 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 BTBD1Q9H0C5 482 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 POLMQ9NP87 494 aaPredicted RBP13.64□□□□□ -0.23
SCAF4-202ENST00000399804 EXOSC4Q9NPD3 245 aaKnown RBP13.64□□□□□ -0.23
SCAF4-202ENST00000399804 ACTR3BQ9P1U1 418 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 ADAMTS6Q9UKP5 1117 aa13.64□□□□□ -0.23
SCAF4-202ENST00000399804 SLC16A5O15375 505 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 ADH1BP00325 375 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 CCR8P51685 355 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 CTSCP53634 463 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 EPS8Q12929 822 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 DOC2AQ14183 400 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 LRRC32Q14392 662 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 UBXN2BQ14CS0 331 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 CTC1Q2NKJ3 1217 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 RFTN2Q52LD8 501 aaPredicted RBP13.63□□□□□ -0.23
SCAF4-202ENST00000399804 BHLHB9Q6PI77 547 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 ABRAXAS1Q6UWZ7 409 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 FAM129CQ86XR2 697 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 SFRP1Q8N474 314 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 SETD9Q8NE22 299 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 CMTM7Q96FZ5 175 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 AURKBQ96GD4 344 aaPredicted RBP13.63□□□□□ -0.23
SCAF4-202ENST00000399804 BIRC8Q96P09 236 aa13.63□□□□□ -0.23
SCAF4-202ENST00000399804 REXO4Q9GZR2 422 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms