RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 RSPO4Q2I0M5 234 aaPredicted RBP4.74□□□□□ -1.65
VIM-210ENST00000637053 BTBD6Q96KE9 485 aa4.74□□□□□ -1.65
VIM-210ENST00000637053 SCO2A0A1W2PP80 73 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 CLK2P49760 499 aaKnown RBP4.73□□□□□ -1.65
VIM-210ENST00000637053 WDR44Q5JSH3 913 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 SLC27A3Q5K4L6 730 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 SLCO4C1Q6ZQN7 724 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 DZIP3Q86Y13 1208 aaKnown RBP4.73□□□□□ -1.65
VIM-210ENST00000637053 GOLGA6L1Q8N7Z2 621 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 TIMMDC1Q9NPL8 285 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 POLR3EQ9NVU0 708 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 GGA1Q9UJY5 639 aa4.73□□□□□ -1.65
VIM-210ENST00000637053 EPXP11678 715 aa4.72□□□□□ -1.65
VIM-210ENST00000637053 AMPD1P23109 780 aa4.72□□□□□ -1.65
VIM-210ENST00000637053 NKAPLQ5M9Q1 402 aa4.72□□□□□ -1.65
VIM-210ENST00000637053 ARTNQ5T4W7 220 aa4.72□□□□□ -1.65
VIM-210ENST00000637053 PPP2R2DQ66LE6 453 aa4.72□□□□□ -1.65
VIM-210ENST00000637053 ZC3H15Q8WU90 426 aaKnown RBP4.72□□□□□ -1.65
VIM-210ENST00000637053 GPAMQ9HCL2 828 aa4.72□□□□□ -1.65
VIM-210ENST00000637053 WASLO00401 505 aaPredicted RBP4.71□□□□□ -1.66
VIM-210ENST00000637053 CDK11BP21127 795 aaKnown RBP4.71□□□□□ -1.66
VIM-210ENST00000637053 GATA4P43694 442 aa4.71□□□□□ -1.66
VIM-210ENST00000637053 CTBSQ01459 385 aa4.71□□□□□ -1.66
VIM-210ENST00000637053 CLN3Q13286 438 aa4.71□□□□□ -1.66
VIM-210ENST00000637053 SEPT12Q8IYM1 358 aa4.71□□□□□ -1.66
VIM-210ENST00000637053 ZFP64Q9NPA5 681 aa4.71□□□□□ -1.66
VIM-210ENST00000637053 CDK11AQ9UQ88 783 aaPredicted RBP4.71□□□□□ -1.66
VIM-210ENST00000637053 GIGYF1O75420 1035 aaPredicted RBP4.7□□□□□ -1.66
VIM-210ENST00000637053 BMP4P12644 408 aa4.7□□□□□ -1.66
VIM-210ENST00000637053 PDIA4P13667 645 aaKnown RBP4.7□□□□□ -1.66
VIM-210ENST00000637053 SCTRP47872 440 aa4.7□□□□□ -1.66
VIM-210ENST00000637053 ERVK-9P63128 1117 aa4.7□□□□□ -1.66
VIM-210ENST00000637053 TAS1R3Q7RTX0 852 aa4.7□□□□□ -1.66
VIM-210ENST00000637053 ABHD17AQ96GS6 310 aa4.7□□□□□ -1.66
VIM-210ENST00000637053 NLRP3Q96P20 1036 aa4.7□□□□□ -1.66
VIM-210ENST00000637053 NDFIP2Q9NV92 336 aa4.7□□□□□ -1.66
VIM-210ENST00000637053 PHKA2P46019 1235 aa4.69□□□□□ -1.66
VIM-210ENST00000637053 TRIM11Q96F44 468 aa4.69□□□□□ -1.66
VIM-210ENST00000637053 CHMP4AQ9BY43 222 aa4.69□□□□□ -1.66
VIM-210ENST00000637053 GOLGA2P5Q9HBQ8 144 aa4.69□□□□□ -1.66
VIM-210ENST00000637053 HMX1Q9NP08 348 aaPredicted RBP4.69□□□□□ -1.66
VIM-210ENST00000637053 TPSG1Q9NRR2 321 aa4.69□□□□□ -1.66
VIM-210ENST00000637053 NOP53Q9NZM5 478 aaKnown RBP4.69□□□□□ -1.66
VIM-210ENST00000637053 HCN2Q9UL51 889 aa4.69□□□□□ -1.66
VIM-210ENST00000637053 PHF24Q9UPV7 400 aa4.69□□□□□ -1.66
VIM-210ENST00000637053 CCDC9Q9Y3X0 531 aaKnown RBP4.69□□□□□ -1.66
VIM-210ENST00000637053 NEURL1BA8MQ27 555 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 PIK3R2O00459 728 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 DYRK3O43781 588 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 BNIP3LO60238 219 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 HMGB1P09429 215 aaKnown RBP4.68□□□□□ -1.66
VIM-210ENST00000637053 CC2D2BQ6DHV5 1058 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 RNF135Q8IUD6 432 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 RUBCNLQ9H714 662 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 ARHGEF10LQ9HCE6 1279 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 KLF15Q9UIH9 416 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 ATXN7L1Q9ULK2 861 aaPredicted RBP4.68□□□□□ -1.66
VIM-210ENST00000637053 SHROOM4Q9ULL8 1493 aa4.68□□□□□ -1.66
VIM-210ENST00000637053 FGFR3P22607 806 aa4.67□□□□□ -1.66
VIM-210ENST00000637053 CHSY3Q70JA7 882 aa4.67□□□□□ -1.66
VIM-210ENST00000637053 OSBPL3Q9H4L5 887 aa4.67□□□□□ -1.66
VIM-210ENST00000637053 TRAK2O60296 914 aa4.66□□□□□ -1.66
VIM-210ENST00000637053 IGSF3O75054 1194 aa4.66□□□□□ -1.66
VIM-210ENST00000637053 ARAFP10398 606 aa4.66□□□□□ -1.66
VIM-210ENST00000637053 PDE4DQ08499 809 aa4.66□□□□□ -1.66
VIM-210ENST00000637053 AK7Q96M32 723 aa4.66□□□□□ -1.66
VIM-210ENST00000637053 PLVAPQ9BX97 442 aa4.66□□□□□ -1.66
VIM-210ENST00000637053 RAB6BQ9NRW1 208 aa4.66□□□□□ -1.66
VIM-210ENST00000637053 A0A1B0GTH6 734 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 IL2RAP01589 272 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 HSP90B1P14625 803 aaKnown RBP4.65□□□□□ -1.67
VIM-210ENST00000637053 MSX1P28360 303 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 CENPCQ03188 943 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 PRSS36Q5K4E3 855 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 PROCA1Q8NCQ7 364 aaPredicted RBP4.65□□□□□ -1.67
VIM-210ENST00000637053 UBE2Q2Q8WVN8 375 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 KRTAP4-7Q9BYR0 210 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 HRH3Q9Y5N1 445 aa4.65□□□□□ -1.67
VIM-210ENST00000637053 AP1G2O75843 785 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 SPATA31C1P0DKV0 1188 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 LBRQ14739 615 aaKnown RBP4.64□□□□□ -1.67
VIM-210ENST00000637053 C4orf17Q53FE4 359 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 CYP2U1Q7Z449 544 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 NBPF11Q86T75 865 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 FCHSD1Q86WN1 690 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 CNKSR1Q969H4 720 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 RSPH6AQ9H0K4 717 aa4.64□□□□□ -1.67
VIM-210ENST00000637053 DNAAF2Q9NVR5 837 aaKnown RBP4.64□□□□□ -1.67
VIM-210ENST00000637053 ESYT1Q9BSJ8 1104 aa4.63□□□□□ -1.67
VIM-210ENST00000637053 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.63□□□□□ -1.67
VIM-210ENST00000637053 FHDC1Q9C0D6 1143 aaPredicted RBP4.63□□□□□ -1.67
VIM-210ENST00000637053 BCL11AQ9H165 835 aa4.63□□□□□ -1.67
VIM-210ENST00000637053 PCDHB9Q9Y5E1 797 aa4.63□□□□□ -1.67
VIM-210ENST00000637053 HYAL3O43820 417 aaPredicted RBP4.62□□□□□ -1.67
VIM-210ENST00000637053 ZSCAN10Q96SZ4 725 aaPredicted RBP4.62□□□□□ -1.67
VIM-210ENST00000637053 TRIM34Q9BYJ4 488 aa4.62□□□□□ -1.67
VIM-210ENST00000637053 ZBTB7CA1YPR0 619 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 FBXO45P0C2W1 286 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 USP17L8P0C7I0 530 aa4.61□□□□□ -1.67
VIM-210ENST00000637053 CSB-PGBD3P0DP91 1061 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms