Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MIR664B-201ENST00000626756 61 ntBASIC-0.7□□□□□ -2.52
HOXA4Q00056 RNU6-176P-201ENST00000517196 105 ntBASIC-0.71□□□□□ -2.52
HOXA4Q00056 SNORD18C-201ENST00000362704 69 ntBASIC-0.72□□□□□ -2.52
HOXA4Q00056 RNA5SP405-201ENST00000363059 114 ntBASIC-0.72□□□□□ -2.52
HOXA4Q00056 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.72□□□□□ -2.52
HOXA4Q00056 RNU6-912P-201ENST00000363800 104 ntBASIC-0.73□□□□□ -2.53
HOXA4Q00056 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.75□□□□□ -2.53
HOXA4Q00056 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.75□□□□□ -2.53
HOXA4Q00056 RNU6-400P-201ENST00000391173 106 ntBASIC-0.76□□□□□ -2.53
HOXA4Q00056 RNU6-1121P-201ENST00000516802 109 ntBASIC-0.76□□□□□ -2.53
HOXA4Q00056 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.77□□□□□ -2.53
HOXA4Q00056 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.77□□□□□ -2.53
HOXA4Q00056 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.77□□□□□ -2.53
HOXA4Q00056 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.78□□□□□ -2.53
HOXA4Q00056 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.79□□□□□ -2.54
HOXA4Q00056 MIR3123-201ENST00000583417 75 ntBASIC-0.79□□□□□ -2.54
HOXA4Q00056 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.79□□□□□ -2.54
HOXA4Q00056 MIR548W-201ENST00000581970 74 ntBASIC-0.8□□□□□ -2.54
HOXA4Q00056 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.81□□□□□ -2.54
HOXA4Q00056 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.81□□□□□ -2.54
HOXA4Q00056 Y_RNA.397-201ENST00000383950 98 ntBASIC-0.81□□□□□ -2.54
HOXA4Q00056 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.81□□□□□ -2.54
HOXA4Q00056 snoU13.10-201ENST00000459301 103 ntBASIC-0.81□□□□□ -2.54
HOXA4Q00056 RNU6-803P-201ENST00000516034 102 ntBASIC-0.81□□□□□ -2.54
HOXA4Q00056 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.82□□□□□ -2.54
HOXA4Q00056 Y_RNA.566-201ENST00000384735 101 ntBASIC-0.82□□□□□ -2.54
HOXA4Q00056 RNU6-724P-201ENST00000390958 105 ntBASIC-0.82□□□□□ -2.54
HOXA4Q00056 MIR379-201ENST00000362218 67 ntBASIC-0.83□□□□□ -2.54
HOXA4Q00056 RNU6-194P-201ENST00000363862 105 ntBASIC-0.83□□□□□ -2.54
HOXA4Q00056 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.84□□□□□ -2.54
HOXA4Q00056 SNORD115.2-201ENST00000391126 59 ntBASIC-0.84□□□□□ -2.54
HOXA4Q00056 RNU6-230P-201ENST00000362457 104 ntBASIC-0.85□□□□□ -2.55
HOXA4Q00056 MIR1254-1-201ENST00000408257 97 ntBASIC-0.85□□□□□ -2.55
HOXA4Q00056 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.85□□□□□ -2.55
HOXA4Q00056 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.86□□□□□ -2.55
HOXA4Q00056 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.86□□□□□ -2.55
HOXA4Q00056 Y_RNA.186-201ENST00000363899 92 ntBASIC-0.86□□□□□ -2.55
HOXA4Q00056 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.86□□□□□ -2.55
HOXA4Q00056 FTX_4.1-201ENST00000616291 147 ntBASIC-0.86□□□□□ -2.55
HOXA4Q00056 SNORD113-3-201ENST00000364830 72 ntBASIC-0.87□□□□□ -2.55
HOXA4Q00056 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.87□□□□□ -2.55
HOXA4Q00056 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.87□□□□□ -2.55
HOXA4Q00056 U6.103-201ENST00000637085 61 ntBASIC-0.87□□□□□ -2.55
HOXA4Q00056 RNA5SP224-201ENST00000365069 126 ntBASIC-0.88□□□□□ -2.55
HOXA4Q00056 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.88□□□□□ -2.55
HOXA4Q00056 Y_RNA.79-201ENST00000362992 113 ntBASIC-0.89□□□□□ -2.55
HOXA4Q00056 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.89□□□□□ -2.55
HOXA4Q00056 SNORD111B-201ENST00000408587 80 ntBASIC-0.91□□□□□ -2.56
HOXA4Q00056 MIR548AM-201ENST00000584298 74 ntBASIC-0.91□□□□□ -2.56
HOXA4Q00056 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.92□□□□□ -2.56
HOXA4Q00056 Y_RNA.511-201ENST00000384514 103 ntBASIC-0.92□□□□□ -2.56
HOXA4Q00056 RNU6-836P-201ENST00000362920 107 ntBASIC-0.94□□□□□ -2.56
HOXA4Q00056 MIR4748-201ENST00000578076 82 ntBASIC-0.94□□□□□ -2.56
HOXA4Q00056 RNU6-841P-201ENST00000383872 107 ntBASIC-0.95□□□□□ -2.56
HOXA4Q00056 RNA5SP106-201ENST00000517274 100 ntBASIC-0.95□□□□□ -2.56
HOXA4Q00056 MIR5693-201ENST00000577722 73 ntBASIC-0.95□□□□□ -2.56
HOXA4Q00056 Y_RNA.513-201ENST00000384522 100 ntBASIC-0.96□□□□□ -2.56
HOXA4Q00056 SNORD45C-201ENST00000383893 79 ntBASIC-0.97□□□□□ -2.56
HOXA4Q00056 RNY4P10-201ENST00000365571 96 ntBASIC-1.01□□□□□ -2.57
HOXA4Q00056 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.02□□□□□ -2.57
HOXA4Q00056 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-1.02□□□□□ -2.57
HOXA4Q00056 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.03□□□□□ -2.57
HOXA4Q00056 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.03□□□□□ -2.57
HOXA4Q00056 RNU6-485P-201ENST00000363475 107 ntBASIC-1.04□□□□□ -2.58
HOXA4Q00056 RNU6-345P-201ENST00000517001 107 ntBASIC-1.04□□□□□ -2.58
HOXA4Q00056 MIR509-1-201ENST00000385265 94 ntBASIC-1.05□□□□□ -2.58
HOXA4Q00056 MIR509-2-201ENST00000390724 91 ntBASIC-1.05□□□□□ -2.58
HOXA4Q00056 Y_RNA.520-201ENST00000384556 102 ntBASIC-1.06□□□□□ -2.58
HOXA4Q00056 MIR656-201ENST00000385224 78 ntBASIC-1.07□□□□□ -2.58
HOXA4Q00056 AC097484.2-201ENST00000509147 251 ntBASIC-1.07□□□□□ -2.58
HOXA4Q00056 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.07□□□□□ -2.58
HOXA4Q00056 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.08□□□□□ -2.58
HOXA4Q00056 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.08□□□□□ -2.58
HOXA4Q00056 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.08□□□□□ -2.58
HOXA4Q00056 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.08□□□□□ -2.58
HOXA4Q00056 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.08□□□□□ -2.58
HOXA4Q00056 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.08□□□□□ -2.58
HOXA4Q00056 RNU6-1128P-201ENST00000362825 109 ntBASIC-1.11□□□□□ -2.59
HOXA4Q00056 RNU6-854P-201ENST00000364036 107 ntBASIC-1.11□□□□□ -2.59
HOXA4Q00056 Y_RNA.657-201ENST00000515983 102 ntBASIC-1.11□□□□□ -2.59
HOXA4Q00056 RNY4P9-201ENST00000363194 97 ntBASIC-1.12□□□□□ -2.59
HOXA4Q00056 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.12□□□□□ -2.59
HOXA4Q00056 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.13□□□□□ -2.59
HOXA4Q00056 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.14□□□□□ -2.59
HOXA4Q00056 SNORD114-13-201ENST00000364377 74 ntBASIC-1.15□□□□□ -2.59
HOXA4Q00056 SNORD115-45-201ENST00000391078 81 ntBASIC-1.17□□□□□ -2.6
HOXA4Q00056 RNY4P25-201ENST00000459254 96 ntBASIC-1.17□□□□□ -2.6
HOXA4Q00056 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.18□□□□□ -2.6
HOXA4Q00056 RNY4P13-201ENST00000384284 96 ntBASIC-1.18□□□□□ -2.6
HOXA4Q00056 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.18□□□□□ -2.6
HOXA4Q00056 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.19□□□□□ -2.6
HOXA4Q00056 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.2□□□□□ -2.6
HOXA4Q00056 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.2□□□□□ -2.6
HOXA4Q00056 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.21□□□□□ -2.6
HOXA4Q00056 RNU6-665P-201ENST00000384639 107 ntBASIC-1.21□□□□□ -2.6
HOXA4Q00056 AL731768.1-201ENST00000603124 139 ntBASIC-1.21□□□□□ -2.6
HOXA4Q00056 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.21□□□□□ -2.6
HOXA4Q00056 RNU6-1091P-201ENST00000363945 107 ntBASIC-1.26□□□□□ -2.61
HOXA4Q00056 MIR548AH-201ENST00000637109 76 ntBASIC-1.26□□□□□ -2.61
HOXA4Q00056 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.27□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms