Protein–RNA interactions for Protein: P62684

HERVK_113, Endogenous retrovirus group K member 113 Gag polyprotein, humanhuman

Predictions only

Length 666 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERVK_113P62684 MIR3123-201ENST00000583417 75 ntBASIC-1.53□□□□□ -2.65
HERVK_113P62684 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.54□□□□□ -2.66
HERVK_113P62684 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.54□□□□□ -2.66
HERVK_113P62684 RNU6-68P-201ENST00000516576 104 ntBASIC-1.55□□□□□ -2.66
HERVK_113P62684 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.57□□□□□ -2.66
HERVK_113P62684 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.58□□□□□ -2.66
HERVK_113P62684 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.58□□□□□ -2.66
HERVK_113P62684 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.58□□□□□ -2.66
HERVK_113P62684 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.58□□□□□ -2.66
HERVK_113P62684 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.59□□□□□ -2.66
HERVK_113P62684 RNU6-912P-201ENST00000363800 104 ntBASIC-1.6□□□□□ -2.67
HERVK_113P62684 RNY4-201ENST00000516507 96 ntBASIC-1.6□□□□□ -2.67
HERVK_113P62684 RNU6-194P-201ENST00000363862 105 ntBASIC-1.63□□□□□ -2.67
HERVK_113P62684 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.63□□□□□ -2.67
HERVK_113P62684 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.63□□□□□ -2.67
HERVK_113P62684 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.64□□□□□ -2.67
HERVK_113P62684 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.64□□□□□ -2.67
HERVK_113P62684 RNU6-841P-201ENST00000383872 107 ntBASIC-1.67□□□□□ -2.68
HERVK_113P62684 RNU6-59P-201ENST00000384787 107 ntBASIC-1.67□□□□□ -2.68
HERVK_113P62684 SNORD115.2-201ENST00000391126 59 ntBASIC-1.68□□□□□ -2.68
HERVK_113P62684 snoU13.10-201ENST00000459301 103 ntBASIC-1.69□□□□□ -2.68
HERVK_113P62684 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.69□□□□□ -2.68
HERVK_113P62684 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.71□□□□□ -2.68
HERVK_113P62684 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.72□□□□□ -2.68
HERVK_113P62684 MIR548AM-201ENST00000584298 74 ntBASIC-1.72□□□□□ -2.68
HERVK_113P62684 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.72□□□□□ -2.68
HERVK_113P62684 MIR548W-201ENST00000581970 74 ntBASIC-1.74□□□□□ -2.69
HERVK_113P62684 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.75□□□□□ -2.69
HERVK_113P62684 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.76□□□□□ -2.69
HERVK_113P62684 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.77□□□□□ -2.69
HERVK_113P62684 RNU6-230P-201ENST00000362457 104 ntBASIC-1.78□□□□□ -2.69
HERVK_113P62684 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.78□□□□□ -2.69
HERVK_113P62684 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.79□□□□□ -2.7
HERVK_113P62684 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.79□□□□□ -2.7
HERVK_113P62684 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.81□□□□□ -2.7
HERVK_113P62684 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.81□□□□□ -2.7
HERVK_113P62684 MIR1254-1-201ENST00000408257 97 ntBASIC-1.81□□□□□ -2.7
HERVK_113P62684 FTX_4.1-201ENST00000616291 147 ntBASIC-1.83□□□□□ -2.7
HERVK_113P62684 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.84□□□□□ -2.7
HERVK_113P62684 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.86□□□□□ -2.71
HERVK_113P62684 RNU6-803P-201ENST00000516034 102 ntBASIC-1.87□□□□□ -2.71
HERVK_113P62684 MIR4748-201ENST00000578076 82 ntBASIC-1.87□□□□□ -2.71
HERVK_113P62684 RNU6-836P-201ENST00000362920 107 ntBASIC-1.88□□□□□ -2.71
HERVK_113P62684 SNORD113-3-201ENST00000364830 72 ntBASIC-1.88□□□□□ -2.71
HERVK_113P62684 RNU6-345P-201ENST00000517001 107 ntBASIC-1.88□□□□□ -2.71
HERVK_113P62684 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.89□□□□□ -2.71
HERVK_113P62684 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.89□□□□□ -2.71
HERVK_113P62684 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.89□□□□□ -2.71
HERVK_113P62684 AC097484.2-201ENST00000509147 251 ntBASIC-1.91□□□□□ -2.72
HERVK_113P62684 RNA5SP224-201ENST00000365069 126 ntBASIC-1.93□□□□□ -2.72
HERVK_113P62684 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.94□□□□□ -2.72
HERVK_113P62684 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.95□□□□□ -2.72
HERVK_113P62684 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.95□□□□□ -2.72
HERVK_113P62684 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.95□□□□□ -2.72
HERVK_113P62684 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.95□□□□□ -2.72
HERVK_113P62684 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.95□□□□□ -2.72
HERVK_113P62684 U6.103-201ENST00000637085 61 ntBASIC-1.95□□□□□ -2.72
HERVK_113P62684 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.95□□□□□ -2.72
HERVK_113P62684 SNORD45C-201ENST00000383893 79 ntBASIC-1.99□□□□□ -2.73
HERVK_113P62684 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.02□□□□□ -2.73
HERVK_113P62684 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.03□□□□□ -2.73
HERVK_113P62684 RNY4P9-201ENST00000363194 97 ntBASIC-2.06□□□□□ -2.74
HERVK_113P62684 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.06□□□□□ -2.74
HERVK_113P62684 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.07□□□□□ -2.74
HERVK_113P62684 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.07□□□□□ -2.74
HERVK_113P62684 MIR656-201ENST00000385224 78 ntBASIC-2.07□□□□□ -2.74
HERVK_113P62684 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.08□□□□□ -2.74
HERVK_113P62684 MIR5693-201ENST00000577722 73 ntBASIC-2.08□□□□□ -2.74
HERVK_113P62684 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.08□□□□□ -2.74
HERVK_113P62684 RNU6-724P-201ENST00000390958 105 ntBASIC-2.14□□□□□ -2.75
HERVK_113P62684 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.15□□□□□ -2.75
HERVK_113P62684 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.16□□□□□ -2.76
HERVK_113P62684 RNA5SP106-201ENST00000517274 100 ntBASIC-2.16□□□□□ -2.76
HERVK_113P62684 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.19□□□□□ -2.76
HERVK_113P62684 MIR509-1-201ENST00000385265 94 ntBASIC-2.19□□□□□ -2.76
HERVK_113P62684 MIR509-2-201ENST00000390724 91 ntBASIC-2.19□□□□□ -2.76
HERVK_113P62684 SNORD111B-201ENST00000408587 80 ntBASIC-2.21□□□□□ -2.76
HERVK_113P62684 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.23□□□□□ -2.77
HERVK_113P62684 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.24□□□□□ -2.77
HERVK_113P62684 RNY4P10-201ENST00000365571 96 ntBASIC-2.24□□□□□ -2.77
HERVK_113P62684 RNY4P25-201ENST00000459254 96 ntBASIC-2.27□□□□□ -2.77
HERVK_113P62684 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.29□□□□□ -2.78
HERVK_113P62684 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.3□□□□□ -2.78
HERVK_113P62684 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.33□□□□□ -2.78
HERVK_113P62684 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.35□□□□□ -2.79
HERVK_113P62684 RNU6-485P-201ENST00000363475 107 ntBASIC-2.36□□□□□ -2.79
HERVK_113P62684 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.36□□□□□ -2.79
HERVK_113P62684 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-2.36□□□□□ -2.79
HERVK_113P62684 AL731768.1-201ENST00000603124 139 ntBASIC-2.38□□□□□ -2.79
HERVK_113P62684 SNORD114-13-201ENST00000364377 74 ntBASIC-2.4□□□□□ -2.79
HERVK_113P62684 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.41□□□□□ -2.8
HERVK_113P62684 Y_RNA.520-201ENST00000384556 102 ntBASIC-2.41□□□□□ -2.8
HERVK_113P62684 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.46□□□□□ -2.8
HERVK_113P62684 RNU6-854P-201ENST00000364036 107 ntBASIC-2.47□□□□□ -2.8
HERVK_113P62684 RNU6-737P-201ENST00000365370 107 ntBASIC-2.49□□□□□ -2.81
HERVK_113P62684 RNU6-133P-201ENST00000383989 107 ntBASIC-2.51□□□□□ -2.81
HERVK_113P62684 AL359920.1-201ENST00000618332 176 ntBASIC-2.52□□□□□ -2.81
HERVK_113P62684 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.53□□□□□ -2.81
HERVK_113P62684 RNU6-422P-201ENST00000384632 107 ntBASIC-2.54□□□□□ -2.82
HERVK_113P62684 SNORD115-45-201ENST00000391078 81 ntBASIC-2.57□□□□□ -2.82
Retrieved 100 of 98,524 protein–RNA pairs in 225.1 ms