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Protein–RNA interactions for Protein: O43490
PROM1, Prominin-1, human
Predictions only
Length
865 aa
.
Download Table
Protein
RNA
Prediction (catRAPID)
Interaction (ENCODE eCLIP)
Gene
UniProt Accession
Transcript Symbol
Ensembl Transcript ID
Length
Transcript Status
Prediction Score
Prediction z-Score
p-Value
Fold Change
PROM1
O43490
MIR548AJ2-201
ENST00000408539
92 nt
BASIC
-1.32
□□□□□ -2.62
PROM1
O43490
MIR4756-201
ENST00000577874
78 nt
BASIC
-1.33
□□□□□ -2.62
PROM1
O43490
AC108019.1-201
ENST00000512540
175 nt
BASIC
-1.34
□□□□□ -2.62
PROM1
O43490
snoU13.10-201
ENST00000459301
103 nt
BASIC
-1.35
□□□□□ -2.63
PROM1
O43490
Y_RNA.345-201
ENST00000365384
92 nt
BASIC
-1.37
□□□□□ -2.63
PROM1
O43490
hsa-mir-4773-1.1-201
ENST00000585225
78 nt
BASIC
-1.37
□□□□□ -2.63
PROM1
O43490
RNU6-912P-201
ENST00000363800
104 nt
BASIC
-1.39
□□□□□ -2.63
PROM1
O43490
Y_RNA.382-201
ENST00000365672
114 nt
BASIC
-1.41
□□□□□ -2.64
PROM1
O43490
RNU6ATAC32P-201
ENST00000516026
76 nt
BASIC
-1.41
□□□□□ -2.64
PROM1
O43490
ZEB2_AS1_4.1-201
ENST00000615159
78 nt
BASIC
-1.42
□□□□□ -2.64
PROM1
O43490
Y_RNA.564-201
ENST00000384708
106 nt
BASIC
-1.43
□□□□□ -2.64
PROM1
O43490
MIR664B-201
ENST00000626756
61 nt
BASIC
-1.43
□□□□□ -2.64
PROM1
O43490
hsa-mir-550a-2.1-201
ENST00000637473
97 nt
BASIC
-1.43
□□□□□ -2.64
PROM1
O43490
Y_RNA.284-201
ENST00000364806
102 nt
BASIC
-1.44
□□□□□ -2.64
PROM1
O43490
RNU6-1324P-201
ENST00000384222
107 nt
BASIC
-1.44
□□□□□ -2.64
PROM1
O43490
Y_RNA.502-201
ENST00000384478
113 nt
BASIC
-1.44
□□□□□ -2.64
PROM1
O43490
SNORD115.2-201
ENST00000391126
59 nt
BASIC
-1.44
□□□□□ -2.64
PROM1
O43490
AC097484.2-201
ENST00000509147
251 nt
BASIC
-1.44
□□□□□ -2.64
PROM1
O43490
RNU6-59P-201
ENST00000384787
107 nt
BASIC
-1.45
□□□□□ -2.64
PROM1
O43490
SNORD113-3-201
ENST00000364830
72 nt
BASIC
-1.47
□□□□□ -2.64
PROM1
O43490
Y_RNA.211-201
ENST00000364164
101 nt
BASIC
-1.48
□□□□□ -2.65
PROM1
O43490
MIR3139-201
ENST00000579145
76 nt
BASIC
-1.48
□□□□□ -2.65
PROM1
O43490
CR2-207
ENST00000640301
151 nt
TSL 1 (best)
BASIC
-1.48
□□□□□ -2.65
PROM1
O43490
MIR4748-201
ENST00000578076
82 nt
BASIC
-1.5
□□□□□ -2.65
PROM1
O43490
MIAT_exon5_2.1-201
ENST00000613562
85 nt
BASIC
-1.5
□□□□□ -2.65
PROM1
O43490
Y_RNA.647-201
ENST00000459194
112 nt
BASIC
-1.51
□□□□□ -2.65
PROM1
O43490
Y_RNA.640-201
ENST00000459296
112 nt
BASIC
-1.51
□□□□□ -2.65
PROM1
O43490
RNU6-345P-201
ENST00000517001
107 nt
BASIC
-1.51
□□□□□ -2.65
PROM1
O43490
Y_RNA.803-201
ENST00000614432
112 nt
BASIC
-1.51
□□□□□ -2.65
PROM1
O43490
Y_RNA.815-201
ENST00000616655
112 nt
BASIC
-1.51
□□□□□ -2.65
PROM1
O43490
Y_RNA.795-201
ENST00000619475
112 nt
BASIC
-1.51
□□□□□ -2.65
PROM1
O43490
Y_RNA.827-201
ENST00000638104
112 nt
BASIC
-1.51
□□□□□ -2.65
PROM1
O43490
RNA5SP405-201
ENST00000363059
114 nt
BASIC
-1.52
□□□□□ -2.65
PROM1
O43490
Y_RNA.134-201
ENST00000363435
105 nt
BASIC
-1.53
□□□□□ -2.65
PROM1
O43490
RNA5SP224-201
ENST00000365069
126 nt
BASIC
-1.53
□□□□□ -2.65
PROM1
O43490
Y_RNA.591-201
ENST00000410228
104 nt
BASIC
-1.53
□□□□□ -2.65
PROM1
O43490
RNU6-1191P-201
ENST00000516799
107 nt
BASIC
-1.53
□□□□□ -2.65
PROM1
O43490
FTX_4.1-201
ENST00000616291
147 nt
BASIC
-1.53
□□□□□ -2.65
PROM1
O43490
Y_RNA.206-201
ENST00000364136
102 nt
BASIC
-1.54
□□□□□ -2.66
PROM1
O43490
Y_RNA.434-201
ENST00000384090
100 nt
BASIC
-1.55
□□□□□ -2.66
PROM1
O43490
MT-TM-201
ENST00000387377
68 nt
BASIC
-1.55
□□□□□ -2.66
PROM1
O43490
RNU6-1169P-201
ENST00000363537
103 nt
BASIC
-1.56
□□□□□ -2.66
PROM1
O43490
MIR1254-1-201
ENST00000408257
97 nt
BASIC
-1.57
□□□□□ -2.66
PROM1
O43490
VTRNA2-1-201
ENST00000602301
127 nt
BASIC
-1.57
□□□□□ -2.66
PROM1
O43490
RNU6-836P-201
ENST00000362920
107 nt
BASIC
-1.62
□□□□□ -2.67
PROM1
O43490
RNU6-194P-201
ENST00000363862
105 nt
BASIC
-1.62
□□□□□ -2.67
PROM1
O43490
Y_RNA.260-201
ENST00000364628
101 nt
BASIC
-1.62
□□□□□ -2.67
PROM1
O43490
RNU6-1121P-201
ENST00000516802
109 nt
BASIC
-1.64
□□□□□ -2.67
PROM1
O43490
Y_RNA.186-201
ENST00000363899
92 nt
BASIC
-1.65
□□□□□ -2.67
PROM1
O43490
MIR656-201
ENST00000385224
78 nt
BASIC
-1.65
□□□□□ -2.67
PROM1
O43490
TARS-215
ENST00000626210
201 nt
TSL 5
BASIC
-1.66
□□□□□ -2.68
PROM1
O43490
RNU6-1306P-201
ENST00000365219
99 nt
BASIC
-1.68
□□□□□ -2.68
PROM1
O43490
TRAJ33-201
ENST00000390504
57 nt
APPRIS P1
BASIC
-1.69
□□□□□ -2.68
PROM1
O43490
U6.103-201
ENST00000637085
61 nt
BASIC
-1.69
□□□□□ -2.68
PROM1
O43490
SNORD45C-201
ENST00000383893
79 nt
BASIC
-1.7
□□□□□ -2.68
PROM1
O43490
MIRLET7A2-201
ENST00000362105
72 nt
BASIC
-1.71
□□□□□ -2.68
PROM1
O43490
Y_RNA.501-201
ENST00000384467
103 nt
BASIC
-1.72
□□□□□ -2.68
PROM1
O43490
Y_RNA.566-201
ENST00000384735
101 nt
BASIC
-1.72
□□□□□ -2.68
PROM1
O43490
Y_RNA.519-201
ENST00000384553
102 nt
BASIC
-1.73
□□□□□ -2.69
PROM1
O43490
Y_RNA.335-201
ENST00000365299
96 nt
BASIC
-1.74
□□□□□ -2.69
PROM1
O43490
AL731768.1-201
ENST00000603124
139 nt
BASIC
-1.78
□□□□□ -2.69
PROM1
O43490
RNU6-854P-201
ENST00000364036
107 nt
BASIC
-1.79
□□□□□ -2.7
PROM1
O43490
Y_RNA.63-201
ENST00000362841
102 nt
BASIC
-1.8
□□□□□ -2.7
PROM1
O43490
RNY4P9-201
ENST00000363194
97 nt
BASIC
-1.81
□□□□□ -2.7
PROM1
O43490
Y_RNA.397-201
ENST00000383950
98 nt
BASIC
-1.83
□□□□□ -2.7
PROM1
O43490
RNU6-724P-201
ENST00000390958
105 nt
BASIC
-1.84
□□□□□ -2.7
PROM1
O43490
RNU6-1340P-201
ENST00000384438
107 nt
BASIC
-1.85
□□□□□ -2.71
PROM1
O43490
RNU6-230P-201
ENST00000362457
104 nt
BASIC
-1.86
□□□□□ -2.71
PROM1
O43490
Y_RNA.513-201
ENST00000384522
100 nt
BASIC
-1.89
□□□□□ -2.71
PROM1
O43490
Y_RNA.59-201
ENST00000362828
102 nt
BASIC
-1.9
□□□□□ -2.71
PROM1
O43490
SNX3P1Y-201
ENST00000615757
176 nt
BASIC
-1.9
□□□□□ -2.71
PROM1
O43490
SNORD111B-201
ENST00000408587
80 nt
BASIC
-1.91
□□□□□ -2.72
PROM1
O43490
RNU6-1277P-201
ENST00000364561
107 nt
BASIC
-1.92
□□□□□ -2.72
PROM1
O43490
RNU6-803P-201
ENST00000516034
102 nt
BASIC
-1.96
□□□□□ -2.72
PROM1
O43490
AL359920.1-201
ENST00000618332
176 nt
BASIC
-1.97
□□□□□ -2.72
PROM1
O43490
Y_RNA.406-201
ENST00000383984
100 nt
BASIC
-1.99
□□□□□ -2.73
PROM1
O43490
Y_RNA.79-201
ENST00000362992
113 nt
BASIC
-2.01
□□□□□ -2.73
PROM1
O43490
MIR5693-201
ENST00000577722
73 nt
BASIC
-2.01
□□□□□ -2.73
PROM1
O43490
RNU6-485P-201
ENST00000363475
107 nt
BASIC
-2.03
□□□□□ -2.73
PROM1
O43490
Y_RNA.612-201
ENST00000410717
95 nt
BASIC
-2.03
□□□□□ -2.73
PROM1
O43490
RNU6ATAC14P-201
ENST00000516218
91 nt
BASIC
-2.03
□□□□□ -2.73
PROM1
O43490
RNU6-1043P-201
ENST00000410355
99 nt
BASIC
-2.04
□□□□□ -2.74
PROM1
O43490
RNU6-1161P-201
ENST00000516176
102 nt
BASIC
-2.05
□□□□□ -2.74
PROM1
O43490
RNU6-737P-201
ENST00000365370
107 nt
BASIC
-2.06
□□□□□ -2.74
PROM1
O43490
MIR124-1-201
ENST00000385275
85 nt
BASIC
-2.06
□□□□□ -2.74
PROM1
O43490
Y_RNA.663-201
ENST00000516043
101 nt
BASIC
-2.06
□□□□□ -2.74
PROM1
O43490
MIRLET7A3-201
ENST00000362116
74 nt
BASIC
-2.07
□□□□□ -2.74
PROM1
O43490
RNY4P25-201
ENST00000459254
96 nt
BASIC
-2.12
□□□□□ -2.75
PROM1
O43490
MIR548AH-201
ENST00000637109
76 nt
BASIC
-2.15
□□□□□ -2.75
PROM1
O43490
SNORD114-13-201
ENST00000364377
74 nt
BASIC
-2.16
□□□□□ -2.76
PROM1
O43490
Y_RNA.652-201
ENST00000458902
102 nt
BASIC
-2.16
□□□□□ -2.76
PROM1
O43490
Y_RNA.137-201
ENST00000363455
112 nt
BASIC
-2.17
□□□□□ -2.76
PROM1
O43490
RNU6-133P-201
ENST00000383989
107 nt
BASIC
-2.17
□□□□□ -2.76
PROM1
O43490
RNU6-422P-201
ENST00000384632
107 nt
BASIC
-2.17
□□□□□ -2.76
PROM1
O43490
Y_RNA.658-201
ENST00000515990
97 nt
BASIC
-2.17
□□□□□ -2.76
PROM1
O43490
RNU6-1091P-201
ENST00000363945
107 nt
BASIC
-2.18
□□□□□ -2.76
PROM1
O43490
Y_RNA.511-201
ENST00000384514
103 nt
BASIC
-2.2
□□□□□ -2.76
PROM1
O43490
SNORD115-45-201
ENST00000391078
81 nt
BASIC
-2.22
□□□□□ -2.76
PROM1
O43490
Y_RNA.830-201
ENST00000628531
96 nt
BASIC
-2.24
□□□□□ -2.77
PROM1
O43490
RNA5SP106-201
ENST00000517274
100 nt
BASIC
-2.25
□□□□□ -2.77
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Retrieved 100 of 98,524 protein–RNA pairs in 198 ms