Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.45□□□□□ -2.48
CCDC9Q9Y3X0 MIR581-201ENST00000384895 96 ntBASIC-0.45□□□□□ -2.48
CCDC9Q9Y3X0 RNU6-79P-201ENST00000362511 107 ntBASIC-0.46□□□□□ -2.48
CCDC9Q9Y3X0 SNORD18C-201ENST00000362704 69 ntBASIC-0.46□□□□□ -2.48
CCDC9Q9Y3X0 RNU6-576P-201ENST00000390854 102 ntBASIC-0.46□□□□□ -2.48
CCDC9Q9Y3X0 MT-TQ-201ENST00000387372 72 ntBASIC-0.47□□□□□ -2.48
CCDC9Q9Y3X0 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.47□□□□□ -2.48
CCDC9Q9Y3X0 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.47□□□□□ -2.48
CCDC9Q9Y3X0 AL500527.2-201ENST00000454105 95 ntBASIC-0.48□□□□□ -2.49
CCDC9Q9Y3X0 MIR379-201ENST00000362218 67 ntBASIC-0.49□□□□□ -2.49
CCDC9Q9Y3X0 MIR3681-201ENST00000580089 72 ntBASIC-0.5□□□□□ -2.49
CCDC9Q9Y3X0 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.5□□□□□ -2.49
CCDC9Q9Y3X0 RNU7-134P-201ENST00000458997 64 ntBASIC-0.51□□□□□ -2.49
CCDC9Q9Y3X0 U6.103-201ENST00000637085 61 ntBASIC-0.51□□□□□ -2.49
CCDC9Q9Y3X0 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.52□□□□□ -2.49
CCDC9Q9Y3X0 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.52□□□□□ -2.49
CCDC9Q9Y3X0 RNU6-695P-201ENST00000391157 104 ntBASIC-0.53□□□□□ -2.49
CCDC9Q9Y3X0 RNU6-68P-201ENST00000516576 104 ntBASIC-0.53□□□□□ -2.49
CCDC9Q9Y3X0 AC091912.2-201ENST00000624798 167 ntBASIC-0.53□□□□□ -2.49
CCDC9Q9Y3X0 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.54□□□□□ -2.5
CCDC9Q9Y3X0 RNU6-400P-201ENST00000391173 106 ntBASIC-0.54□□□□□ -2.5
CCDC9Q9Y3X0 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.55□□□□□ -2.5
CCDC9Q9Y3X0 MIR196A1-201ENST00000388006 70 ntBASIC-0.55□□□□□ -2.5
CCDC9Q9Y3X0 MIR6874-201ENST00000635894 71 ntBASIC-0.55□□□□□ -2.5
CCDC9Q9Y3X0 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.56□□□□□ -2.5
CCDC9Q9Y3X0 RNU6-724P-201ENST00000390958 105 ntBASIC-0.56□□□□□ -2.5
CCDC9Q9Y3X0 uc_338.19-201ENST00000616808 99 ntBASIC-0.56□□□□□ -2.5
CCDC9Q9Y3X0 MIR4499-201ENST00000584834 69 ntBASIC-0.57□□□□□ -2.5
CCDC9Q9Y3X0 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.58□□□□□ -2.5
CCDC9Q9Y3X0 SNORD83B-201ENST00000386745 93 ntBASIC-0.58□□□□□ -2.5
CCDC9Q9Y3X0 MIR601-201ENST00000385256 79 ntBASIC-0.59□□□□□ -2.5
CCDC9Q9Y3X0 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.59□□□□□ -2.5
CCDC9Q9Y3X0 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.6□□□□□ -2.51
CCDC9Q9Y3X0 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.6□□□□□ -2.51
CCDC9Q9Y3X0 MIR587-201ENST00000384845 96 ntBASIC-0.61□□□□□ -2.51
CCDC9Q9Y3X0 SNORD115.2-201ENST00000391126 59 ntBASIC-0.62□□□□□ -2.51
CCDC9Q9Y3X0 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.63□□□□□ -2.51
CCDC9Q9Y3X0 RNU6-912P-201ENST00000363800 104 ntBASIC-0.63□□□□□ -2.51
CCDC9Q9Y3X0 MIR198-201ENST00000637333 62 ntBASIC-0.63□□□□□ -2.51
CCDC9Q9Y3X0 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-0.64□□□□□ -2.51
CCDC9Q9Y3X0 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.67□□□□□ -2.52
CCDC9Q9Y3X0 RNU6-836P-201ENST00000362920 107 ntBASIC-0.68□□□□□ -2.52
CCDC9Q9Y3X0 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.68□□□□□ -2.52
CCDC9Q9Y3X0 MIR3123-201ENST00000583417 75 ntBASIC-0.68□□□□□ -2.52
CCDC9Q9Y3X0 MIR4320-201ENST00000636981 65 ntBASIC-0.68□□□□□ -2.52
CCDC9Q9Y3X0 RNU6-10P-201ENST00000384036 107 ntBASIC-0.69□□□□□ -2.52
CCDC9Q9Y3X0 MIR8485-201ENST00000401372 91 ntBASIC-0.69□□□□□ -2.52
CCDC9Q9Y3X0 MIR548H1-201ENST00000408610 102 ntBASIC-0.69□□□□□ -2.52
CCDC9Q9Y3X0 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.69□□□□□ -2.52
CCDC9Q9Y3X0 MIR6738-201ENST00000619620 64 ntBASIC-0.69□□□□□ -2.52
CCDC9Q9Y3X0 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.7□□□□□ -2.52
CCDC9Q9Y3X0 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.7□□□□□ -2.52
CCDC9Q9Y3X0 FTX_4.1-201ENST00000616291 147 ntBASIC-0.7□□□□□ -2.52
CCDC9Q9Y3X0 MIR6502-201ENST00000617296 76 ntBASIC-0.7□□□□□ -2.52
CCDC9Q9Y3X0 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.71□□□□□ -2.52
CCDC9Q9Y3X0 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.71□□□□□ -2.52
CCDC9Q9Y3X0 RNA5SP224-201ENST00000365069 126 ntBASIC-0.71□□□□□ -2.52
CCDC9Q9Y3X0 MIR1207-201ENST00000408249 87 ntBASIC-0.71□□□□□ -2.52
CCDC9Q9Y3X0 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.71□□□□□ -2.52
CCDC9Q9Y3X0 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.72□□□□□ -2.52
CCDC9Q9Y3X0 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.72□□□□□ -2.52
CCDC9Q9Y3X0 MIR378F-201ENST00000578143 78 ntBASIC-0.72□□□□□ -2.52
CCDC9Q9Y3X0 SNORD111B-201ENST00000408587 80 ntBASIC-0.73□□□□□ -2.53
CCDC9Q9Y3X0 U4.2-201ENST00000618561 85 ntBASIC-0.73□□□□□ -2.53
CCDC9Q9Y3X0 RNU6-841P-201ENST00000383872 107 ntBASIC-0.74□□□□□ -2.53
CCDC9Q9Y3X0 RNU6-345P-201ENST00000517001 107 ntBASIC-0.74□□□□□ -2.53
CCDC9Q9Y3X0 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.75□□□□□ -2.53
CCDC9Q9Y3X0 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.75□□□□□ -2.53
CCDC9Q9Y3X0 AC138207.3-201ENST00000585289 166 ntBASIC-0.75□□□□□ -2.53
CCDC9Q9Y3X0 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.75□□□□□ -2.53
CCDC9Q9Y3X0 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.75□□□□□ -2.53
CCDC9Q9Y3X0 snoU13.10-201ENST00000459301 103 ntBASIC-0.76□□□□□ -2.53
CCDC9Q9Y3X0 MIR4306-201ENST00000583390 91 ntBASIC-0.76□□□□□ -2.53
CCDC9Q9Y3X0 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.76□□□□□ -2.53
CCDC9Q9Y3X0 Y_RNA.335-201ENST00000365299 96 ntBASIC-0.77□□□□□ -2.53
CCDC9Q9Y3X0 MIR548W-201ENST00000581970 74 ntBASIC-0.77□□□□□ -2.53
CCDC9Q9Y3X0 SNORD45C-201ENST00000383893 79 ntBASIC-0.78□□□□□ -2.53
CCDC9Q9Y3X0 MIR1254-1-201ENST00000408257 97 ntBASIC-0.78□□□□□ -2.53
CCDC9Q9Y3X0 SCARNA17-201ENST00000516183 144 ntBASIC-0.78□□□□□ -2.53
CCDC9Q9Y3X0 MIR4324-201ENST00000584846 72 ntBASIC-0.78□□□□□ -2.53
CCDC9Q9Y3X0 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.79□□□□□ -2.54
CCDC9Q9Y3X0 RNU6-485P-201ENST00000363475 107 ntBASIC-0.79□□□□□ -2.54
CCDC9Q9Y3X0 SNORD114-3-201ENST00000364969 75 ntBASIC-0.8□□□□□ -2.54
CCDC9Q9Y3X0 RNU6-133P-201ENST00000383989 107 ntBASIC-0.8□□□□□ -2.54
CCDC9Q9Y3X0 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.8□□□□□ -2.54
CCDC9Q9Y3X0 MIR4520-1-201ENST00000582609 70 ntBASIC-0.8□□□□□ -2.54
CCDC9Q9Y3X0 MIR548AM-201ENST00000584298 74 ntBASIC-0.8□□□□□ -2.54
CCDC9Q9Y3X0 MIR656-201ENST00000385224 78 ntBASIC-0.81□□□□□ -2.54
CCDC9Q9Y3X0 SNORD113-3-201ENST00000364830 72 ntBASIC-0.83□□□□□ -2.54
CCDC9Q9Y3X0 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.83□□□□□ -2.54
CCDC9Q9Y3X0 MIR365A-201ENST00000362260 87 ntBASIC-0.85□□□□□ -2.55
CCDC9Q9Y3X0 AC097484.2-201ENST00000509147 251 ntBASIC-0.85□□□□□ -2.55
CCDC9Q9Y3X0 RNU6-706P-201ENST00000517229 104 ntBASIC-0.86□□□□□ -2.55
CCDC9Q9Y3X0 Y_RNA.519-201ENST00000384553 102 ntBASIC-0.87□□□□□ -2.55
CCDC9Q9Y3X0 RNA5SP86-201ENST00000390869 98 ntBASIC-0.88□□□□□ -2.55
CCDC9Q9Y3X0 MIR4770-201ENST00000579149 58 ntBASIC-0.88□□□□□ -2.55
CCDC9Q9Y3X0 RNU6-1340P-201ENST00000384438 107 ntBASIC-0.89□□□□□ -2.55
CCDC9Q9Y3X0 Y_RNA.647-201ENST00000459194 112 ntBASIC-0.89□□□□□ -2.55
CCDC9Q9Y3X0 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.89□□□□□ -2.55
CCDC9Q9Y3X0 MIR5591-201ENST00000578248 65 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms