Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.99□□□□□ -2.57
CHMP3Q9Y3E7 RNU6-724P-201ENST00000390958 105 ntBASIC-1□□□□□ -2.57
CHMP3Q9Y3E7 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.01□□□□□ -2.57
CHMP3Q9Y3E7 U6.103-201ENST00000637085 61 ntBASIC-1.01□□□□□ -2.57
CHMP3Q9Y3E7 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.02□□□□□ -2.57
CHMP3Q9Y3E7 MIR196A1-201ENST00000388006 70 ntBASIC-1.03□□□□□ -2.57
CHMP3Q9Y3E7 MIR224-201ENST00000384889 81 ntBASIC-1.04□□□□□ -2.58
CHMP3Q9Y3E7 uc_338.19-201ENST00000616808 99 ntBASIC-1.04□□□□□ -2.58
CHMP3Q9Y3E7 MIR4499-201ENST00000584834 69 ntBASIC-1.05□□□□□ -2.58
CHMP3Q9Y3E7 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.06□□□□□ -2.58
CHMP3Q9Y3E7 MIR379-201ENST00000362218 67 ntBASIC-1.09□□□□□ -2.58
CHMP3Q9Y3E7 SNORD114-15-201ENST00000364687 72 ntBASIC-1.12□□□□□ -2.59
CHMP3Q9Y3E7 RNU6-912P-201ENST00000363800 104 ntBASIC-1.13□□□□□ -2.59
CHMP3Q9Y3E7 SNORD115.2-201ENST00000391126 59 ntBASIC-1.14□□□□□ -2.59
CHMP3Q9Y3E7 MT-TQ-201ENST00000387372 72 ntBASIC-1.15□□□□□ -2.59
CHMP3Q9Y3E7 RNU6-400P-201ENST00000391173 106 ntBASIC-1.15□□□□□ -2.59
CHMP3Q9Y3E7 MIR8485-201ENST00000401372 91 ntBASIC-1.15□□□□□ -2.59
CHMP3Q9Y3E7 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.16□□□□□ -2.6
CHMP3Q9Y3E7 SNORD83B-201ENST00000386745 93 ntBASIC-1.16□□□□□ -2.6
CHMP3Q9Y3E7 snoU13.19-201ENST00000459148 104 ntBASIC-1.16□□□□□ -2.6
CHMP3Q9Y3E7 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.17□□□□□ -2.6
CHMP3Q9Y3E7 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.19□□□□□ -2.6
CHMP3Q9Y3E7 RNU6-30P-201ENST00000384561 107 ntBASIC-1.2□□□□□ -2.6
CHMP3Q9Y3E7 MIR548AX-201ENST00000580117 73 ntBASIC-1.21□□□□□ -2.6
CHMP3Q9Y3E7 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.22□□□□□ -2.6
CHMP3Q9Y3E7 RNU4-63P-201ENST00000411313 118 ntBASIC-1.23□□□□□ -2.61
CHMP3Q9Y3E7 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-1.23□□□□□ -2.61
CHMP3Q9Y3E7 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.25□□□□□ -2.61
CHMP3Q9Y3E7 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.27□□□□□ -2.61
CHMP3Q9Y3E7 RNA5SP67-201ENST00000516422 131 ntBASIC-1.27□□□□□ -2.61
CHMP3Q9Y3E7 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.27□□□□□ -2.61
CHMP3Q9Y3E7 AC138207.3-201ENST00000585289 166 ntBASIC-1.28□□□□□ -2.61
CHMP3Q9Y3E7 MIR3123-201ENST00000583417 75 ntBASIC-1.29□□□□□ -2.62
CHMP3Q9Y3E7 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.3□□□□□ -2.62
CHMP3Q9Y3E7 SNORD111B-201ENST00000408587 80 ntBASIC-1.31□□□□□ -2.62
CHMP3Q9Y3E7 MIR548H1-201ENST00000408610 102 ntBASIC-1.31□□□□□ -2.62
CHMP3Q9Y3E7 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.32□□□□□ -2.62
CHMP3Q9Y3E7 FTX_4.1-201ENST00000616291 147 ntBASIC-1.32□□□□□ -2.62
CHMP3Q9Y3E7 RNU6-836P-201ENST00000362920 107 ntBASIC-1.33□□□□□ -2.62
CHMP3Q9Y3E7 RNA5SP224-201ENST00000365069 126 ntBASIC-1.34□□□□□ -2.62
CHMP3Q9Y3E7 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.34□□□□□ -2.62
CHMP3Q9Y3E7 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.35□□□□□ -2.63
CHMP3Q9Y3E7 MIR6502-201ENST00000617296 76 ntBASIC-1.35□□□□□ -2.63
CHMP3Q9Y3E7 snoU13.10-201ENST00000459301 103 ntBASIC-1.37□□□□□ -2.63
CHMP3Q9Y3E7 MIR1254-1-201ENST00000408257 97 ntBASIC-1.38□□□□□ -2.63
CHMP3Q9Y3E7 MIR548W-201ENST00000581970 74 ntBASIC-1.38□□□□□ -2.63
CHMP3Q9Y3E7 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.39□□□□□ -2.63
CHMP3Q9Y3E7 MIR378F-201ENST00000578143 78 ntBASIC-1.39□□□□□ -2.63
CHMP3Q9Y3E7 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.4□□□□□ -2.63
CHMP3Q9Y3E7 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.4□□□□□ -2.63
CHMP3Q9Y3E7 MIR3681-201ENST00000580089 72 ntBASIC-1.43□□□□□ -2.64
CHMP3Q9Y3E7 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.44□□□□□ -2.64
CHMP3Q9Y3E7 MIR4520-1-201ENST00000582609 70 ntBASIC-1.44□□□□□ -2.64
CHMP3Q9Y3E7 MIR409-201ENST00000362237 79 ntBASIC-1.45□□□□□ -2.64
CHMP3Q9Y3E7 SNORD45C-201ENST00000383893 79 ntBASIC-1.46□□□□□ -2.64
CHMP3Q9Y3E7 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.47□□□□□ -2.64
CHMP3Q9Y3E7 RNU6-485P-201ENST00000363475 107 ntBASIC-1.49□□□□□ -2.65
CHMP3Q9Y3E7 SNORD113-3-201ENST00000364830 72 ntBASIC-1.5□□□□□ -2.65
CHMP3Q9Y3E7 RNU6-841P-201ENST00000383872 107 ntBASIC-1.5□□□□□ -2.65
CHMP3Q9Y3E7 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.5□□□□□ -2.65
CHMP3Q9Y3E7 RNU6-345P-201ENST00000517001 107 ntBASIC-1.52□□□□□ -2.65
CHMP3Q9Y3E7 SCARNA17-201ENST00000516183 144 ntBASIC-1.53□□□□□ -2.65
CHMP3Q9Y3E7 MIR4306-201ENST00000583390 91 ntBASIC-1.54□□□□□ -2.66
CHMP3Q9Y3E7 MIR548AM-201ENST00000584298 74 ntBASIC-1.55□□□□□ -2.66
CHMP3Q9Y3E7 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.57□□□□□ -2.66
CHMP3Q9Y3E7 MIR487B-201ENST00000385021 84 ntBASIC-1.57□□□□□ -2.66
CHMP3Q9Y3E7 MIR656-201ENST00000385224 78 ntBASIC-1.62□□□□□ -2.67
CHMP3Q9Y3E7 RNA5SP266-201ENST00000410273 108 ntBASIC-1.65□□□□□ -2.67
CHMP3Q9Y3E7 RNA5SP86-201ENST00000390869 98 ntBASIC-1.66□□□□□ -2.68
CHMP3Q9Y3E7 RNU6-133P-201ENST00000383989 107 ntBASIC-1.68□□□□□ -2.68
CHMP3Q9Y3E7 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.68□□□□□ -2.68
CHMP3Q9Y3E7 RNA5SP331-201ENST00000364986 107 ntBASIC-1.69□□□□□ -2.68
CHMP3Q9Y3E7 AC097484.2-201ENST00000509147 251 ntBASIC-1.69□□□□□ -2.68
CHMP3Q9Y3E7 AL627230.5-201ENST00000619807 58 ntBASIC-1.69□□□□□ -2.68
CHMP3Q9Y3E7 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.72□□□□□ -2.68
CHMP3Q9Y3E7 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.72□□□□□ -2.68
CHMP3Q9Y3E7 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.72□□□□□ -2.68
CHMP3Q9Y3E7 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.72□□□□□ -2.68
CHMP3Q9Y3E7 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.72□□□□□ -2.68
CHMP3Q9Y3E7 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.72□□□□□ -2.68
CHMP3Q9Y3E7 MIR5591-201ENST00000578248 65 ntBASIC-1.73□□□□□ -2.69
CHMP3Q9Y3E7 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.74□□□□□ -2.69
CHMP3Q9Y3E7 MIR587-201ENST00000384845 96 ntBASIC-1.74□□□□□ -2.69
CHMP3Q9Y3E7 RNU6-706P-201ENST00000517229 104 ntBASIC-1.74□□□□□ -2.69
CHMP3Q9Y3E7 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.77□□□□□ -2.69
CHMP3Q9Y3E7 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.78□□□□□ -2.69
CHMP3Q9Y3E7 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.78□□□□□ -2.69
CHMP3Q9Y3E7 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.79□□□□□ -2.7
CHMP3Q9Y3E7 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.81□□□□□ -2.7
CHMP3Q9Y3E7 MIR4770-201ENST00000579149 58 ntBASIC-1.81□□□□□ -2.7
CHMP3Q9Y3E7 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.83□□□□□ -2.7
CHMP3Q9Y3E7 HLA-S-202ENST00000425174 53 ntBASIC-1.83□□□□□ -2.7
CHMP3Q9Y3E7 RNU6-1091P-201ENST00000363945 107 ntBASIC-1.86□□□□□ -2.71
CHMP3Q9Y3E7 RNU6-894P-201ENST00000517094 105 ntBASIC-1.88□□□□□ -2.71
CHMP3Q9Y3E7 MIR6738-201ENST00000619620 64 ntBASIC-1.88□□□□□ -2.71
CHMP3Q9Y3E7 MIR4324-201ENST00000584846 72 ntBASIC-1.9□□□□□ -2.71
CHMP3Q9Y3E7 RNU6-983P-201ENST00000516004 103 ntBASIC-1.92□□□□□ -2.72
CHMP3Q9Y3E7 RNU6-10P-201ENST00000384036 107 ntBASIC-1.93□□□□□ -2.72
CHMP3Q9Y3E7 AC108019.1-201ENST00000512540 175 ntBASIC-1.95□□□□□ -2.72
CHMP3Q9Y3E7 MIR4320-201ENST00000636981 65 ntBASIC-1.95□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms