Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-226P-201ENST00000363778 107 ntBASIC-1.53□□□□□ -2.65
MSH3P20585 SNORA17.4-201ENST00000391287 132 ntBASIC-1.53□□□□□ -2.65
MSH3P20585 SNORD113-4-201ENST00000364802 75 ntBASIC-1.54□□□□□ -2.66
MSH3P20585 MIR548N-201ENST00000408742 75 ntBASIC-1.54□□□□□ -2.66
MSH3P20585 MIR5591-201ENST00000578248 65 ntBASIC-1.54□□□□□ -2.66
MSH3P20585 MIR1285-2-201ENST00000408311 88 ntBASIC-1.55□□□□□ -2.66
MSH3P20585 MIR4770-201ENST00000579149 58 ntBASIC-1.56□□□□□ -2.66
MSH3P20585 SNORD18C-201ENST00000362704 69 ntBASIC-1.57□□□□□ -2.66
MSH3P20585 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.57□□□□□ -2.66
MSH3P20585 AC079150.2-201ENST00000443733 78 ntBASIC-1.57□□□□□ -2.66
MSH3P20585 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.57□□□□□ -2.66
MSH3P20585 MIR581-201ENST00000384895 96 ntBASIC-1.58□□□□□ -2.66
MSH3P20585 MIR4426-201ENST00000640330 63 ntBASIC-1.58□□□□□ -2.66
MSH3P20585 MIR365A-201ENST00000362260 87 ntBASIC-1.6□□□□□ -2.67
MSH3P20585 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.6□□□□□ -2.67
MSH3P20585 U4.2-201ENST00000618561 85 ntBASIC-1.6□□□□□ -2.67
MSH3P20585 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.61□□□□□ -2.67
MSH3P20585 RNU6-499P-201ENST00000365615 107 ntBASIC-1.61□□□□□ -2.67
MSH3P20585 MIR3123-201ENST00000583417 75 ntBASIC-1.61□□□□□ -2.67
MSH3P20585 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.61□□□□□ -2.67
MSH3P20585 MIR4441-201ENST00000582623 100 ntBASIC-1.62□□□□□ -2.67
MSH3P20585 RNU6-742P-201ENST00000365289 107 ntBASIC-1.63□□□□□ -2.67
MSH3P20585 MIR1246-201ENST00000636535 73 ntBASIC-1.63□□□□□ -2.67
MSH3P20585 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.64□□□□□ -2.67
MSH3P20585 RNA5SP86-201ENST00000390869 98 ntBASIC-1.64□□□□□ -2.67
MSH3P20585 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.64□□□□□ -2.67
MSH3P20585 RNU6-788P-201ENST00000390967 104 ntBASIC-1.65□□□□□ -2.67
MSH3P20585 RNU6-300P-201ENST00000459080 104 ntBASIC-1.65□□□□□ -2.67
MSH3P20585 RNU6-176P-201ENST00000517196 105 ntBASIC-1.65□□□□□ -2.67
MSH3P20585 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.66□□□□□ -2.68
MSH3P20585 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.66□□□□□ -2.68
MSH3P20585 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.66□□□□□ -2.68
MSH3P20585 RNU6-980P-201ENST00000516925 103 ntBASIC-1.66□□□□□ -2.68
MSH3P20585 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.66□□□□□ -2.68
MSH3P20585 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.66□□□□□ -2.68
MSH3P20585 RNU4-33P-201ENST00000364316 85 ntBASIC-1.67□□□□□ -2.68
MSH3P20585 MIR548H1-201ENST00000408610 102 ntBASIC-1.67□□□□□ -2.68
MSH3P20585 RNU6-841P-201ENST00000383872 107 ntBASIC-1.68□□□□□ -2.68
MSH3P20585 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.69□□□□□ -2.68
MSH3P20585 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.72□□□□□ -2.68
MSH3P20585 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.73□□□□□ -2.69
MSH3P20585 SNORD114-3-201ENST00000364969 75 ntBASIC-1.73□□□□□ -2.69
MSH3P20585 MIR548AM-201ENST00000584298 74 ntBASIC-1.73□□□□□ -2.69
MSH3P20585 MIR4723-201ENST00000585070 81 ntBASIC-1.73□□□□□ -2.69
MSH3P20585 MIR379-201ENST00000362218 67 ntBASIC-1.74□□□□□ -2.69
MSH3P20585 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.74□□□□□ -2.69
MSH3P20585 MIR487B-201ENST00000385021 84 ntBASIC-1.75□□□□□ -2.69
MSH3P20585 RNU6-68P-201ENST00000516576 104 ntBASIC-1.75□□□□□ -2.69
MSH3P20585 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.75□□□□□ -2.69
MSH3P20585 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.76□□□□□ -2.69
MSH3P20585 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.78□□□□□ -2.69
MSH3P20585 snoU13.10-201ENST00000459301 103 ntBASIC-1.79□□□□□ -2.7
MSH3P20585 MIR548W-201ENST00000581970 74 ntBASIC-1.8□□□□□ -2.7
MSH3P20585 RNU6-983P-201ENST00000516004 103 ntBASIC-1.81□□□□□ -2.7
MSH3P20585 MIR548AL-201ENST00000578416 97 ntBASIC-1.81□□□□□ -2.7
MSH3P20585 RNY4P27-201ENST00000363341 96 ntBASIC-1.82□□□□□ -2.7
MSH3P20585 SNORD18.1-201ENST00000363807 70 ntBASIC-1.82□□□□□ -2.7
MSH3P20585 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.82□□□□□ -2.7
MSH3P20585 MIR1207-201ENST00000408249 87 ntBASIC-1.84□□□□□ -2.7
MSH3P20585 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.84□□□□□ -2.7
MSH3P20585 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.85□□□□□ -2.71
MSH3P20585 RNU6-912P-201ENST00000363800 104 ntBASIC-1.86□□□□□ -2.71
MSH3P20585 RNU6-614P-201ENST00000384369 107 ntBASIC-1.86□□□□□ -2.71
MSH3P20585 U6.59-201ENST00000615686 107 ntBASIC-1.86□□□□□ -2.71
MSH3P20585 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.87□□□□□ -2.71
MSH3P20585 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.87□□□□□ -2.71
MSH3P20585 RNU6-936P-201ENST00000384005 107 ntBASIC-1.87□□□□□ -2.71
MSH3P20585 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.88□□□□□ -2.71
MSH3P20585 MIR4317-201ENST00000637586 65 ntBASIC-1.88□□□□□ -2.71
MSH3P20585 RNU6-838P-201ENST00000363399 108 ntBASIC-1.89□□□□□ -2.71
MSH3P20585 AC108019.1-201ENST00000512540 175 ntBASIC-1.89□□□□□ -2.71
MSH3P20585 RNU4-88P-201ENST00000411220 86 ntBASIC-1.9□□□□□ -2.71
MSH3P20585 RNU6-753P-201ENST00000363926 107 ntBASIC-1.91□□□□□ -2.72
MSH3P20585 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.91□□□□□ -2.72
MSH3P20585 MIR548H4-201ENST00000408689 111 ntBASIC-1.91□□□□□ -2.72
MSH3P20585 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.91□□□□□ -2.72
MSH3P20585 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.92□□□□□ -2.72
MSH3P20585 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.92□□□□□ -2.72
MSH3P20585 RNU6-808P-201ENST00000391233 108 ntBASIC-1.95□□□□□ -2.72
MSH3P20585 AC097484.2-201ENST00000509147 251 ntBASIC-1.95□□□□□ -2.72
MSH3P20585 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.98□□□□□ -2.73
MSH3P20585 MIR4756-201ENST00000577874 78 ntBASIC-1.98□□□□□ -2.73
MSH3P20585 RNU6-822P-201ENST00000362707 106 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 MTND4LP19-201ENST00000403051 166 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.01□□□□□ -2.73
MSH3P20585 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.02□□□□□ -2.73
MSH3P20585 SNORD113-3-201ENST00000364830 72 ntBASIC-2.02□□□□□ -2.73
MSH3P20585 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.02□□□□□ -2.73
MSH3P20585 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.03□□□□□ -2.73
MSH3P20585 RNU6-930P-201ENST00000390938 100 ntBASIC-2.03□□□□□ -2.73
MSH3P20585 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.03□□□□□ -2.73
MSH3P20585 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.03□□□□□ -2.73
MSH3P20585 RNU6-1326P-201ENST00000391262 107 ntBASIC-2.04□□□□□ -2.74
MSH3P20585 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.04□□□□□ -2.74
MSH3P20585 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.04□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms