Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MIR4788-201ENST00000639104 80 ntBASIC0.72□□□□□ -2.29
MSH5O43196 SNORD114-9-201ENST00000364370 72 ntBASIC0.71□□□□□ -2.3
MSH5O43196 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.7□□□□□ -2.3
MSH5O43196 RNU6-1161P-201ENST00000516176 102 ntBASIC0.69□□□□□ -2.3
MSH5O43196 AC114737.2-201ENST00000421583 173 ntBASIC0.68□□□□□ -2.3
MSH5O43196 VTRNA1-3-201ENST00000365645 89 ntBASIC0.64□□□□□ -2.31
MSH5O43196 MIR382-201ENST00000637119 76 ntBASIC0.62□□□□□ -2.31
MSH5O43196 RNA5SP285-201ENST00000516619 119 ntBASIC0.61□□□□□ -2.31
MSH5O43196 ULK3-223ENST00000631115 126 ntTSL 5 BASIC0.61□□□□□ -2.31
MSH5O43196 MIR6086-201ENST00000638065 55 ntBASIC0.61□□□□□ -2.31
MSH5O43196 RNU6-576P-201ENST00000390854 102 ntBASIC0.6□□□□□ -2.31
MSH5O43196 MIR3666-201ENST00000607845 111 ntBASIC0.6□□□□□ -2.31
MSH5O43196 RNA5SP63-201ENST00000391225 112 ntBASIC0.59□□□□□ -2.31
MSH5O43196 AC023932.2-201ENST00000603176 175 ntBASIC0.52□□□□□ -2.33
MSH5O43196 SNORA18.1-201ENST00000363418 128 ntBASIC0.51□□□□□ -2.33
MSH5O43196 SNORA50A-201ENST00000384225 134 ntBASIC0.51□□□□□ -2.33
MSH5O43196 RNA5SP134-201ENST00000516492 96 ntBASIC0.48□□□□□ -2.33
MSH5O43196 Y_RNA.175-201ENST00000363794 111 ntBASIC0.46□□□□□ -2.34
MSH5O43196 RNU6-841P-201ENST00000383872 107 ntBASIC0.46□□□□□ -2.34
MSH5O43196 RNA5SP300-201ENST00000391197 107 ntBASIC0.45□□□□□ -2.34
MSH5O43196 Y_RNA.137-201ENST00000363455 112 ntBASIC0.44□□□□□ -2.34
MSH5O43196 SNORD114-25-201ENST00000363742 72 ntBASIC0.44□□□□□ -2.34
MSH5O43196 MIR4636-201ENST00000582271 80 ntBASIC0.44□□□□□ -2.34
MSH5O43196 Y_RNA.663-201ENST00000516043 101 ntBASIC0.43□□□□□ -2.34
MSH5O43196 MIR548AM-201ENST00000584298 74 ntBASIC0.42□□□□□ -2.34
MSH5O43196 AP001180.6-201ENST00000584918 159 ntBASIC0.42□□□□□ -2.34
MSH5O43196 MIR6759-201ENST00000638110 65 ntBASIC0.42□□□□□ -2.34
MSH5O43196 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.41□□□□□ -2.34
MSH5O43196 SNORA3B-201ENST00000391305 131 ntBASIC0.41□□□□□ -2.34
MSH5O43196 SNORD115-45-201ENST00000391078 81 ntBASIC0.4□□□□□ -2.35
MSH5O43196 MIR6718-201ENST00000616153 80 ntBASIC0.39□□□□□ -2.35
MSH5O43196 MIR4802-201ENST00000581881 80 ntBASIC0.37□□□□□ -2.35
MSH5O43196 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.37□□□□□ -2.35
MSH5O43196 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.35□□□□□ -2.35
MSH5O43196 MIR5093-201ENST00000583199 100 ntBASIC0.35□□□□□ -2.35
MSH5O43196 Y_RNA.103-201ENST00000363171 102 ntBASIC0.34□□□□□ -2.36
MSH5O43196 MIR4290-201ENST00000583807 95 ntBASIC0.34□□□□□ -2.36
MSH5O43196 SNORD4A-201ENST00000459174 72 ntBASIC0.33□□□□□ -2.36
MSH5O43196 MIR5589-201ENST00000579442 60 ntBASIC0.32□□□□□ -2.36
MSH5O43196 MIR5190-201ENST00000581537 80 ntBASIC0.32□□□□□ -2.36
MSH5O43196 MIR4436A-201ENST00000585278 85 ntBASIC0.3□□□□□ -2.36
MSH5O43196 MIR1295A-201ENST00000408463 79 ntBASIC0.27□□□□□ -2.37
MSH5O43196 AL731768.1-201ENST00000603124 139 ntBASIC0.25□□□□□ -2.37
MSH5O43196 MIR1295B-201ENST00000636144 60 ntBASIC0.22□□□□□ -2.37
MSH5O43196 Y_RNA.696-201ENST00000516725 107 ntBASIC0.21□□□□□ -2.38
MSH5O43196 RNU6-226P-201ENST00000363778 107 ntBASIC0.2□□□□□ -2.38
MSH5O43196 MIR8485-201ENST00000401372 91 ntBASIC0.2□□□□□ -2.38
MSH5O43196 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC0.19□□□□□ -2.38
MSH5O43196 Y_RNA.185-201ENST00000363894 100 ntBASIC0.15□□□□□ -2.39
MSH5O43196 AL627230.5-201ENST00000619807 58 ntBASIC0.15□□□□□ -2.39
MSH5O43196 SNORD114-14-201ENST00000362723 75 ntBASIC0.14□□□□□ -2.39
MSH5O43196 MIR4768-201ENST00000585270 74 ntBASIC0.13□□□□□ -2.39
MSH5O43196 RNU6-1157P-201ENST00000384456 106 ntBASIC0.12□□□□□ -2.39
MSH5O43196 Y_RNA.678-201ENST00000516408 96 ntBASIC0.11□□□□□ -2.39
MSH5O43196 snoU13.19-201ENST00000459148 104 ntBASIC0.09□□□□□ -2.4
MSH5O43196 MIR371B-201ENST00000638082 66 ntBASIC0.09□□□□□ -2.4
MSH5O43196 MIR196A2-201ENST00000385189 110 ntBASIC0.08□□□□□ -2.4
MSH5O43196 RNU6-30P-201ENST00000384561 107 ntBASIC0.07□□□□□ -2.4
MSH5O43196 Y_RNA.391-201ENST00000383933 94 ntBASIC0.06□□□□□ -2.4
MSH5O43196 MIR4667-201ENST00000578933 66 ntBASIC0.05□□□□□ -2.4
MSH5O43196 RNU6-1277P-201ENST00000364561 107 ntBASIC0.04□□□□□ -2.4
MSH5O43196 SNORD114-16-201ENST00000363044 70 ntBASIC0.03□□□□□ -2.4
MSH5O43196 SNORD114-31-201ENST00000363219 75 ntBASIC0.03□□□□□ -2.4
MSH5O43196 MIR487B-201ENST00000385021 84 ntBASIC0.02□□□□□ -2.41
MSH5O43196 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
MSH5O43196 RNA5SP25-201ENST00000410815 110 ntBASIC0.01□□□□□ -2.41
MSH5O43196 MIR6502-201ENST00000617296 76 ntBASIC0.01□□□□□ -2.41
MSH5O43196 MIR4493-201ENST00000584016 73 ntBASIC0□□□□□ -2.41
MSH5O43196 AL359920.1-201ENST00000618332 176 ntBASIC0□□□□□ -2.41
MSH5O43196 Y_RNA.165-201ENST00000363721 102 ntBASIC-0.01□□□□□ -2.41
MSH5O43196 RNA5SP368-201ENST00000364298 116 ntBASIC-0.01□□□□□ -2.41
MSH5O43196 RNU6-758P-201ENST00000516292 89 ntBASIC-0.01□□□□□ -2.41
MSH5O43196 IGLVI-20-201ENST00000519296 130 ntBASIC-0.03□□□□□ -2.41
MSH5O43196 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.04□□□□□ -2.42
MSH5O43196 Y_RNA.652-201ENST00000458902 102 ntBASIC-0.05□□□□□ -2.42
MSH5O43196 RNU6-706P-201ENST00000517229 104 ntBASIC-0.07□□□□□ -2.42
MSH5O43196 RNU4-85P-201ENST00000364675 123 ntBASIC-0.08□□□□□ -2.42
MSH5O43196 RNA5SP449-201ENST00000516871 130 ntBASIC-0.08□□□□□ -2.42
MSH5O43196 MIR604-201ENST00000384880 94 ntBASIC-0.11□□□□□ -2.43
MSH5O43196 MIR214-201ENST00000385214 110 ntBASIC-0.12□□□□□ -2.43
MSH5O43196 SNORD126-201ENST00000459475 77 ntBASIC-0.12□□□□□ -2.43
MSH5O43196 Y_RNA.501-201ENST00000384467 103 ntBASIC-0.15□□□□□ -2.43
MSH5O43196 SNORD114-15-201ENST00000364687 72 ntBASIC-0.17□□□□□ -2.44
MSH5O43196 MIR101-1-201ENST00000362265 75 ntBASIC-0.18□□□□□ -2.44
MSH5O43196 RNA5SP331-201ENST00000364986 107 ntBASIC-0.19□□□□□ -2.44
MSH5O43196 Y_RNA.612-201ENST00000410717 95 ntBASIC-0.19□□□□□ -2.44
MSH5O43196 MIR4520-1-201ENST00000582609 70 ntBASIC-0.19□□□□□ -2.44
MSH5O43196 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.19□□□□□ -2.44
MSH5O43196 SNORD95.1-201ENST00000364099 68 ntBASIC-0.2□□□□□ -2.44
MSH5O43196 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.21□□□□□ -2.44
MSH5O43196 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.22□□□□□ -2.44
MSH5O43196 MIR4499-201ENST00000584834 69 ntBASIC-0.23□□□□□ -2.45
MSH5O43196 uc_338.19-201ENST00000616808 99 ntBASIC-0.23□□□□□ -2.45
MSH5O43196 SNORD14C-201ENST00000365382 88 ntBASIC-0.24□□□□□ -2.45
MSH5O43196 MIR409-201ENST00000362237 79 ntBASIC-0.26□□□□□ -2.45
MSH5O43196 MIRLET7A3-201ENST00000362116 74 ntBASIC-0.28□□□□□ -2.45
MSH5O43196 SNORD114-28-201ENST00000363610 72 ntBASIC-0.28□□□□□ -2.45
MSH5O43196 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.3□□□□□ -2.46
MSH5O43196 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.32□□□□□ -2.46
MSH5O43196 MIR8064-201ENST00000612863 90 ntBASIC-0.32□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms