Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 U4.2-201ENST00000618561 85 ntBASIC-0.55□□□□□ -2.5
LIMCH1Q9UPQ0 RNU6-995P-201ENST00000391244 107 ntBASIC-0.56□□□□□ -2.5
LIMCH1Q9UPQ0 MIR548Q-201ENST00000408404 100 ntBASIC-0.56□□□□□ -2.5
LIMCH1Q9UPQ0 MIR4324-201ENST00000584846 72 ntBASIC-0.56□□□□□ -2.5
LIMCH1Q9UPQ0 SNORD116.2-201ENST00000391251 93 ntBASIC-0.57□□□□□ -2.5
LIMCH1Q9UPQ0 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.57□□□□□ -2.5
LIMCH1Q9UPQ0 RNU7-151P-201ENST00000516930 53 ntBASIC-0.57□□□□□ -2.5
LIMCH1Q9UPQ0 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.58□□□□□ -2.5
LIMCH1Q9UPQ0 MIR1207-201ENST00000408249 87 ntBASIC-0.58□□□□□ -2.5
LIMCH1Q9UPQ0 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.58□□□□□ -2.5
LIMCH1Q9UPQ0 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-10P-201ENST00000384036 107 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 AL500527.2-201ENST00000454105 95 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 RNU7-160P-201ENST00000516660 62 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 MIR5683-201ENST00000636514 76 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-810P-201ENST00000364001 107 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR579-201ENST00000385221 98 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR6738-201ENST00000619620 64 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR7978-201ENST00000636158 59 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR147A-201ENST00000385079 72 ntBASIC-0.62□□□□□ -2.51
LIMCH1Q9UPQ0 AP002795.1-201ENST00000534879 84 ntBASIC-0.62□□□□□ -2.51
LIMCH1Q9UPQ0 MIR3170-201ENST00000582699 77 ntBASIC-0.62□□□□□ -2.51
LIMCH1Q9UPQ0 MIR3115-201ENST00000577915 68 ntBASIC-0.63□□□□□ -2.51
LIMCH1Q9UPQ0 MIR378F-201ENST00000578143 78 ntBASIC-0.63□□□□□ -2.51
LIMCH1Q9UPQ0 MIR4490-201ENST00000582647 84 ntBASIC-0.63□□□□□ -2.51
LIMCH1Q9UPQ0 SNORD114-3-201ENST00000364969 75 ntBASIC-0.64□□□□□ -2.51
LIMCH1Q9UPQ0 SNORA40B-201ENST00000385573 128 ntBASIC-0.64□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.64□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-499P-201ENST00000365615 107 ntBASIC-0.65□□□□□ -2.51
LIMCH1Q9UPQ0 SNORA40.16-201ENST00000517238 121 ntBASIC-0.65□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-446P-201ENST00000362827 106 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-431P-201ENST00000383874 107 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 MIR633-201ENST00000384821 98 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 MIR125B1-201ENST00000385236 88 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 SNORD83B-201ENST00000386745 93 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 SNORD64-201ENST00000386683 67 ntBASIC-0.67□□□□□ -2.52
LIMCH1Q9UPQ0 RNA5SP461-201ENST00000516451 104 ntBASIC-0.67□□□□□ -2.52
LIMCH1Q9UPQ0 MIR4499-201ENST00000584834 69 ntBASIC-0.67□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-247P-201ENST00000362636 107 ntBASIC-0.69□□□□□ -2.52
LIMCH1Q9UPQ0 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.69□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-829P-201ENST00000363700 112 ntBASIC-0.69□□□□□ -2.52
LIMCH1Q9UPQ0 SNORD114-25-201ENST00000363742 72 ntBASIC-0.7□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.7□□□□□ -2.52
LIMCH1Q9UPQ0 MIR507-201ENST00000385234 94 ntBASIC-0.7□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-828P-201ENST00000364876 107 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 MIR520D-201ENST00000385002 87 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 AC079150.2-201ENST00000443733 78 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.72□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.72□□□□□ -2.52
LIMCH1Q9UPQ0 MIR365A-201ENST00000362260 87 ntBASIC-0.73□□□□□ -2.53
LIMCH1Q9UPQ0 MIR4306-201ENST00000583390 91 ntBASIC-0.73□□□□□ -2.53
LIMCH1Q9UPQ0 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.73□□□□□ -2.53
LIMCH1Q9UPQ0 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.74□□□□□ -2.53
LIMCH1Q9UPQ0 SNORD63.2-201ENST00000516303 64 ntBASIC-0.74□□□□□ -2.53
LIMCH1Q9UPQ0 MIR382-201ENST00000637119 76 ntBASIC-0.74□□□□□ -2.53
LIMCH1Q9UPQ0 SNORA27.2-201ENST00000363365 126 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 RNU6-608P-201ENST00000383927 104 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 snoU83B.1-201ENST00000517136 88 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 uc_338.19-201ENST00000616808 99 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 RNA5SP26-201ENST00000362406 119 ntBASIC-0.76□□□□□ -2.53
LIMCH1Q9UPQ0 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.76□□□□□ -2.53
LIMCH1Q9UPQ0 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.77□□□□□ -2.53
LIMCH1Q9UPQ0 RPL35AP4-201ENST00000412007 102 ntBASIC-0.77□□□□□ -2.53
LIMCH1Q9UPQ0 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.78□□□□□ -2.53
LIMCH1Q9UPQ0 RNU6-974P-201ENST00000384099 108 ntBASIC-0.78□□□□□ -2.53
LIMCH1Q9UPQ0 SNORD45.2-201ENST00000363552 72 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 MIR29B1-201ENST00000385015 81 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 RNU6-258P-201ENST00000390884 101 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 RNU6-419P-201ENST00000517030 63 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 MIR23C-201ENST00000579846 100 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 SNORD113-4-201ENST00000364802 75 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 MIR1285-2-201ENST00000408311 88 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 AC090616.4-201ENST00000448026 115 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 MIR4441-201ENST00000582623 100 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 RNA5SP180-201ENST00000516181 101 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 MIR548X-201ENST00000580069 75 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 MIR6818-201ENST00000621576 65 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 MIR3165-201ENST00000579874 75 ntBASIC-0.82□□□□□ -2.54
LIMCH1Q9UPQ0 RNU6-226P-201ENST00000363778 107 ntBASIC-0.83□□□□□ -2.54
LIMCH1Q9UPQ0 AL451105.1-201ENST00000450005 189 ntBASIC-0.83□□□□□ -2.54
LIMCH1Q9UPQ0 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.84□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.85□□□□□ -2.55
LIMCH1Q9UPQ0 RNU6-706P-201ENST00000517229 104 ntBASIC-0.86□□□□□ -2.55
LIMCH1Q9UPQ0 RNY4P27-201ENST00000363341 96 ntBASIC-0.87□□□□□ -2.55
LIMCH1Q9UPQ0 RNU6-614P-201ENST00000384369 107 ntBASIC-0.87□□□□□ -2.55
LIMCH1Q9UPQ0 U6.59-201ENST00000615686 107 ntBASIC-0.87□□□□□ -2.55
LIMCH1Q9UPQ0 MIR8485-201ENST00000401372 91 ntBASIC-0.88□□□□□ -2.55
LIMCH1Q9UPQ0 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.88□□□□□ -2.55
LIMCH1Q9UPQ0 RNU6-164P-201ENST00000364604 103 ntBASIC-0.89□□□□□ -2.55
LIMCH1Q9UPQ0 RNU7-134P-201ENST00000458997 64 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 218.8 ms