Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 SNORD116-16-201ENST00000384533 92 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR214-201ENST00000385214 110 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 RNU6-721P-201ENST00000410155 105 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 RNU6-122P-201ENST00000516818 107 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-1-201ENST00000578940 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-2-201ENST00000579107 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-3-201ENST00000579566 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 MIR3179-4-201ENST00000617599 84 ntBASIC-0.15□□□□□ -2.43
HOXD9P28356 RNU6-940P-201ENST00000363433 104 ntBASIC-0.16□□□□□ -2.44
HOXD9P28356 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.16□□□□□ -2.44
HOXD9P28356 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.16□□□□□ -2.44
HOXD9P28356 MIR429-201ENST00000362106 83 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 RNU6-810P-201ENST00000364001 107 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 MIR329-2-201ENST00000385029 84 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 RNA5SP300-201ENST00000391197 107 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 SNORA3B-201ENST00000391305 131 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 AP002795.1-201ENST00000534879 84 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 MIR4436A-201ENST00000585278 85 ntBASIC-0.17□□□□□ -2.44
HOXD9P28356 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 SNORD74.6-201ENST00000364796 70 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 MIR518B-201ENST00000385127 83 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 RNU7-151P-201ENST00000516930 53 ntBASIC-0.18□□□□□ -2.44
HOXD9P28356 RNU6-924P-201ENST00000362926 108 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 MIR196A2-201ENST00000385189 110 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 SNORD75.1-201ENST00000408373 60 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 RNU6-732P-201ENST00000516033 103 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 RNU6-231P-201ENST00000517122 103 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 MIR4645-201ENST00000583158 77 ntBASIC-0.19□□□□□ -2.44
HOXD9P28356 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 SNORD114-25-201ENST00000363742 72 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 SNORD19-201ENST00000391191 68 ntBASIC-0.2□□□□□ -2.44
HOXD9P28356 RNU6-974P-201ENST00000384099 108 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 MIR507-201ENST00000385234 94 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 RNU6-696P-201ENST00000390834 107 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 SNORD63.1-201ENST00000516178 80 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 RNU6-320P-201ENST00000516511 106 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 MIR5589-201ENST00000579442 60 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 MIR8064-201ENST00000612863 90 ntBASIC-0.21□□□□□ -2.44
HOXD9P28356 RNU6-247P-201ENST00000362636 107 ntBASIC-0.22□□□□□ -2.44
HOXD9P28356 RNU6-35P-201ENST00000384530 107 ntBASIC-0.22□□□□□ -2.44
HOXD9P28356 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.22□□□□□ -2.44
HOXD9P28356 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 SNORA13-201ENST00000458790 133 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 MIR3938-201ENST00000582157 103 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 MIR7110-201ENST00000612638 86 ntBASIC-0.23□□□□□ -2.45
HOXD9P28356 RNU6-446P-201ENST00000362827 106 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNA5SP275-201ENST00000363936 118 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 SNORD113-4-201ENST00000364802 75 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR520D-201ENST00000385002 87 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNU6-995P-201ENST00000391244 107 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 RNU6-284P-201ENST00000411105 106 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 SNORD63.2-201ENST00000516303 64 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR3681-201ENST00000580089 72 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR4490-201ENST00000582647 84 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 MIR4493-201ENST00000584016 73 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 AP001180.6-201ENST00000584918 159 ntBASIC-0.24□□□□□ -2.45
HOXD9P28356 SNORD114-31-201ENST00000363219 75 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 RNU6-258P-201ENST00000390884 101 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 SNORD57-201ENST00000448188 72 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 SNORD126-201ENST00000459475 77 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 MIR548AZ-201ENST00000616567 95 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 MIR5683-201ENST00000636514 76 ntBASIC-0.25□□□□□ -2.45
HOXD9P28356 RNU6-829P-201ENST00000363700 112 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.26□□□□□ -2.45
HOXD9P28356 SNORA40.16-201ENST00000517238 121 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 MIR3170-201ENST00000582699 77 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 MIR7978-201ENST00000636158 59 ntBASIC-0.26□□□□□ -2.45
HOXD9P28356 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 MIR548AA1-201ENST00000384971 97 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 SNORD64-201ENST00000386683 67 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 SNORA26.4-201ENST00000391188 123 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 RPS29P8-201ENST00000445109 171 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 AC021146.6-201ENST00000514659 117 ntBASIC-0.27□□□□□ -2.45
HOXD9P28356 MIR101-1-201ENST00000362265 75 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 AL353691.2-201ENST00000443795 59 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 RNA5SP476-201ENST00000516613 103 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 IGLVI-20-201ENST00000519296 130 ntBASIC-0.28□□□□□ -2.45
HOXD9P28356 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 SNORD114-28-201ENST00000363610 72 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 RNU6-431P-201ENST00000383874 107 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 SNORA40B-201ENST00000385573 128 ntBASIC-0.29□□□□□ -2.46
HOXD9P28356 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
HOXD9P28356 AL500527.2-201ENST00000454105 95 ntBASIC-0.3□□□□□ -2.46
HOXD9P28356 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.3□□□□□ -2.46
HOXD9P28356 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 RNU6-499P-201ENST00000365615 107 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 MTND4LP19-201ENST00000403051 166 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 AC079150.2-201ENST00000443733 78 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 RNU7-134P-201ENST00000458997 64 ntBASIC-0.31□□□□□ -2.46
HOXD9P28356 RNU7-119P-201ENST00000459279 63 ntBASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms