Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 SNORD18.2-201ENST00000459604 70 ntBASIC-0.28□□□□□ -2.45
NPHP3-ACAD11A0A0J9YXS1 SNORD22.1-201ENST00000516331 125 ntBASIC-0.28□□□□□ -2.45
NPHP3-ACAD11A0A0J9YXS1 RNA5SP457-201ENST00000363657 124 ntBASIC-0.29□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 MIR204-201ENST00000385200 110 ntBASIC-0.29□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 RNA5SP169-201ENST00000517268 117 ntBASIC-0.29□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 SNORD57-201ENST00000448188 72 ntBASIC-0.3□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.3□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 RNU6-732P-201ENST00000516033 103 ntBASIC-0.31□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.31□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 MIR548AA1-201ENST00000384971 97 ntBASIC-0.32□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.33□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 RNU6-810P-201ENST00000364001 107 ntBASIC-0.33□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 MIR579-201ENST00000385221 98 ntBASIC-0.33□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.33□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 SNORD63.1-201ENST00000516178 80 ntBASIC-0.33□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 SNORA40.16-201ENST00000517238 121 ntBASIC-0.33□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 SNORD75.1-201ENST00000408373 60 ntBASIC-0.34□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 SNORA13-201ENST00000458790 133 ntBASIC-0.34□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 RNU7-151P-201ENST00000516930 53 ntBASIC-0.34□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 MIR3179-1-201ENST00000578940 84 ntBASIC-0.34□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 MIR3179-2-201ENST00000579107 84 ntBASIC-0.34□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 MIR3179-3-201ENST00000579566 84 ntBASIC-0.34□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 MIR3179-4-201ENST00000617599 84 ntBASIC-0.34□□□□□ -2.46
NPHP3-ACAD11A0A0J9YXS1 SNORA40B-201ENST00000385573 128 ntBASIC-0.35□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.36□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 SNORD113-4-201ENST00000364802 75 ntBASIC-0.37□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 AP000533.3-201ENST00000447704 118 ntBASIC-0.37□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 MIR7978-201ENST00000636158 59 ntBASIC-0.37□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 RNU6-995P-201ENST00000391244 107 ntBASIC-0.38□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 RNU6-320P-201ENST00000516511 106 ntBASIC-0.38□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 SNORD19-201ENST00000391191 68 ntBASIC-0.39□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.4□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.4□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 MIR214-201ENST00000385214 110 ntBASIC-0.4□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.4□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 RNU6-721P-201ENST00000410155 105 ntBASIC-0.4□□□□□ -2.47
NPHP3-ACAD11A0A0J9YXS1 RNA5SP257-201ENST00000363023 116 ntBASIC-0.41□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 MIR329-2-201ENST00000385029 84 ntBASIC-0.41□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 SNORA26.4-201ENST00000391188 123 ntBASIC-0.41□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 RNU7-160P-201ENST00000516660 62 ntBASIC-0.41□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.41□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 MIR4490-201ENST00000582647 84 ntBASIC-0.41□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 MTND4LP19-201ENST00000403051 166 ntBASIC-0.42□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 MIR548Q-201ENST00000408404 100 ntBASIC-0.43□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 RNA5SP275-201ENST00000363936 118 ntBASIC-0.44□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 SNORD114-17-201ENST00000364699 75 ntBASIC-0.44□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.44□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 SNORD115-33-201ENST00000363723 82 ntBASIC-0.45□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 RNU6-614P-201ENST00000384369 107 ntBASIC-0.45□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 MIR125B1-201ENST00000385236 88 ntBASIC-0.45□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 U6.59-201ENST00000615686 107 ntBASIC-0.45□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.46□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.46□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 SNORD126-201ENST00000459475 77 ntBASIC-0.46□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 AC021146.6-201ENST00000514659 117 ntBASIC-0.46□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 MIR3170-201ENST00000582699 77 ntBASIC-0.46□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 SNORD14C-201ENST00000365382 88 ntBASIC-0.47□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 RNA5SP285-201ENST00000516619 119 ntBASIC-0.47□□□□□ -2.48
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.48□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 AL353691.2-201ENST00000443795 59 ntBASIC-0.48□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 IGLVI-20-201ENST00000519296 130 ntBASIC-0.48□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 AP002795.1-201ENST00000534879 84 ntBASIC-0.48□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 MIR196A2-201ENST00000385189 110 ntBASIC-0.49□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 SNORD114-31-201ENST00000363219 75 ntBASIC-0.5□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.5□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.51□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 MIR5683-201ENST00000636514 76 ntBASIC-0.51□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.52□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 SNORA3B-201ENST00000391305 131 ntBASIC-0.52□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 RNU6-284P-201ENST00000411105 106 ntBASIC-0.52□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.52□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 RNU6-247P-201ENST00000362636 107 ntBASIC-0.53□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.53□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 RNU6-828P-201ENST00000364876 107 ntBASIC-0.53□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 MIR520D-201ENST00000385002 87 ntBASIC-0.53□□□□□ -2.49
NPHP3-ACAD11A0A0J9YXS1 SNORD114-14-201ENST00000362723 75 ntBASIC-0.54□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.54□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 MIR6759-201ENST00000638110 65 ntBASIC-0.54□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 SNORD63.2-201ENST00000516303 64 ntBASIC-0.55□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.55□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 MIR4645-201ENST00000583158 77 ntBASIC-0.55□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 SNORA32.3-201ENST00000384772 121 ntBASIC-0.56□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 MIR548AZ-201ENST00000616567 95 ntBASIC-0.56□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 RNU6-974P-201ENST00000384099 108 ntBASIC-0.57□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 RNU6-419P-201ENST00000517030 63 ntBASIC-0.57□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 MIR548X-201ENST00000580069 75 ntBASIC-0.57□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 MIR4436A-201ENST00000585278 85 ntBASIC-0.57□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 MIR8064-201ENST00000612863 90 ntBASIC-0.57□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 SNORD114-28-201ENST00000363610 72 ntBASIC-0.59□□□□□ -2.5
NPHP3-ACAD11A0A0J9YXS1 RNU6-258P-201ENST00000390884 101 ntBASIC-0.61□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 RNU6-936P-201ENST00000384005 107 ntBASIC-0.62□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 RNU6-980P-201ENST00000516925 103 ntBASIC-0.62□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 RNU6-608P-201ENST00000383927 104 ntBASIC-0.63□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 RPS29P8-201ENST00000445109 171 ntBASIC-0.63□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.63□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.63□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.64□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 RNU6-987P-201ENST00000384759 104 ntBASIC-0.65□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 MIR507-201ENST00000385234 94 ntBASIC-0.65□□□□□ -2.51
NPHP3-ACAD11A0A0J9YXS1 RNU4-33P-201ENST00000364316 85 ntBASIC-0.66□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms